def dataverse_set_config(node_addon, auth, **kwargs): """Saves selected Dataverse and dataset to node settings""" user_settings = node_addon.user_settings user = auth.user if user_settings and user_settings.owner != user: raise HTTPError(http.FORBIDDEN) try: assert_clean(request.json) except AssertionError: # TODO: Test me! raise HTTPError(http.NOT_ACCEPTABLE) alias = request.json.get('dataverse', {}).get('alias') doi = request.json.get('dataset', {}).get('doi') if doi is None or alias is None: return HTTPError(http.BAD_REQUEST) connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, alias) dataset = client.get_dataset(dataverse, doi) node_addon.set_folder(dataverse, dataset, auth) return {'dataverse': dataverse.title, 'dataset': dataset.title}, http.OK
def serialized_node_settings(self): result = super(DataverseSerializer, self).serialized_node_settings result['hosts'] = DEFAULT_HOSTS # Update with Dataverse specific fields if self.node_settings.has_auth: external_account = self.node_settings.external_account dataverse_host = external_account.oauth_key connection = client.connect_from_settings(self.node_settings) dataverses = client.get_dataverses(connection) result.update({ 'dataverseHost': dataverse_host, 'connected': connection is not None, 'dataverses': [ {'title': dataverse.title, 'alias': dataverse.alias} for dataverse in dataverses ], 'savedDataverse': { 'title': self.node_settings.dataverse, 'alias': self.node_settings.dataverse_alias, }, 'savedDataset': { 'title': self.node_settings.dataset, 'doi': self.node_settings.dataset_doi, } }) return result
def dataverse_set_config(node_addon, auth, **kwargs): """Saves selected Dataverse and dataset to node settings""" user_settings = node_addon.user_settings user = auth.user if user_settings and user_settings.owner != user: raise HTTPError(http.FORBIDDEN) try: assert_clean(request.json) except AssertionError: # TODO: Test me! raise HTTPError(http.NOT_ACCEPTABLE) alias = request.json.get('dataverse', {}).get('alias') doi = request.json.get('dataset', {}).get('doi') if doi is None or alias is None: return HTTPError(http.BAD_REQUEST) connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, alias) dataset = client.get_dataset(dataverse, doi) node_addon.set_folder(dataverse, dataset, auth) return {'dataverse': dataverse.title, 'dataset': dataset.title}, http.OK
def dataverse_set_config(node_addon, auth, **kwargs): """Saves selected Dataverse and dataset to node settings""" user_settings = node_addon.user_settings user = auth.user if user_settings and user_settings.owner != user: raise HTTPError(http_status.HTTP_403_FORBIDDEN) alias = request.json.get('dataverse', {}).get('alias') doi = request.json.get('dataset', {}).get('doi') if doi is None or alias is None: return HTTPError(http_status.HTTP_400_BAD_REQUEST) connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, alias) dataset = client.get_dataset(dataverse, doi) node_addon.set_folder(dataverse, dataset, auth) return { 'dataverse': dataverse.title, 'dataset': dataset.title }, http_status.HTTP_200_OK
def test_connect_from_settings(self, mock_connect): node_settings = NodeSettings() node_settings.external_account = create_external_account( self.host, self.token, ) connection = connect_from_settings(node_settings) assert_true(connection) mock_connect.assert_called_once_with(self.host, self.token)
def test_connect_from_settings(self, mock_connect): node_settings = NodeSettings() node_settings.external_account = create_external_account( self.host, self.token, ) connection = connect_from_settings(node_settings) assert_true(connection) mock_connect.assert_called_once_with(self.host, self.token)
def dataverse_get_datasets(node_addon, **kwargs): """Get list of datasets from provided Dataverse alias""" alias = request.json.get('alias') connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, alias) datasets = client.get_datasets(dataverse) ret = { 'alias': alias, # include alias to verify dataset container 'datasets': [{'title': dataset.title, 'doi': dataset.doi} for dataset in datasets], } return ret, http.OK
def test_connect_from_settings_none(self): connection = connect_from_settings(None) assert_is_none(connection)
def test_connect_from_settings_none(self): connection = connect_from_settings(None) assert_is_none(connection)
def _dataverse_root_folder(node_addon, auth, **kwargs): node = node_addon.owner default_version = 'latest-published' version = 'latest-published' if not node.can_edit( auth) else default_version # Quit if no dataset linked if not node_addon.complete: return [] can_edit = node.can_edit(auth) permissions = { 'edit': can_edit and not node.is_registration, 'view': node.can_view(auth) } try: connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, node_addon.dataverse_alias) dataset = client.get_dataset(dataverse, node_addon.dataset_doi) except SSLError: return [ rubeus.build_addon_root( node_addon, node_addon.dataset, permissions=permissions, private_key=kwargs.get('view_only', None), ) ] # Quit if doi does not produce a dataset if dataset is None: return [] published_files = client.get_files(dataset, published=True) # Produce draft version or quit if no published version is available if not published_files: if can_edit: version = 'latest' else: return [] urls = { 'publish': node.api_url_for('dataverse_publish_dataset'), } # determine if there are any changes between the published and draft # versions of the dataset try: dataset.get_metadata('latest-published') dataset_is_published = True dataset_draft_modified = dataset.get_state() == 'DRAFT' except VersionJsonNotFoundError: dataset_is_published = False dataset_draft_modified = True # Get the dataverse host # (stored in oauth_key because dataverse doesn't use that) dataverse_host = node_addon.external_account.oauth_key try: host_custom_publish_text = client.get_custom_publish_text(connection) except OperationFailedError: host_custom_publish_text = '' return [ rubeus.build_addon_root( node_addon, node_addon.dataset, urls=urls, permissions=permissions, dataset=node_addon.dataset, doi=dataset.doi, dataverse=dataverse.title, hasPublishedFiles=bool(published_files), dataverseIsPublished=dataverse.is_published, datasetIsPublished=dataset_is_published, datasetDraftModified=dataset_draft_modified, version=version, host=dataverse_host, hostCustomPublishText=host_custom_publish_text, private_key=kwargs.get('view_only', None), ) ]
def _dataverse_root_folder(node_addon, auth, **kwargs): node = node_addon.owner default_version = 'latest-published' version = 'latest-published' if not node.can_edit(auth) else default_version # Quit if no dataset linked if not node_addon.complete: return [] can_edit = node.can_edit(auth) permissions = { 'edit': can_edit and not node.is_registration, 'view': node.can_view(auth) } try: connection = client.connect_from_settings(node_addon) dataverse = client.get_dataverse(connection, node_addon.dataverse_alias) dataset = client.get_dataset(dataverse, node_addon.dataset_doi) except SSLError: return [rubeus.build_addon_root( node_addon, node_addon.dataset, permissions=permissions, private_key=kwargs.get('view_only', None), )] # Quit if doi does not produce a dataset if dataset is None: return [] published_files = client.get_files(dataset, published=True) # Produce draft version or quit if no published version is available if not published_files: if can_edit: version = 'latest' else: return [] urls = { 'publish': node.api_url_for('dataverse_publish_dataset'), } # determine if there are any changes between the published and draft # versions of the dataset try: dataset.get_metadata('latest-published') dataset_is_published = True dataset_draft_modified = dataset.get_state() == 'DRAFT' except VersionJsonNotFoundError: dataset_is_published = False dataset_draft_modified = True # Get the dataverse host # (stored in oauth_key because dataverse doesn't use that) dataverse_host = node_addon.external_account.oauth_key try: host_custom_publish_text = client.get_custom_publish_text(connection) except OperationFailedError: host_custom_publish_text = '' return [rubeus.build_addon_root( node_addon, node_addon.dataset, urls=urls, permissions=permissions, dataset=node_addon.dataset, doi=dataset.doi, dataverse=dataverse.title, hasPublishedFiles=bool(published_files), dataverseIsPublished=dataverse.is_published, datasetIsPublished=dataset_is_published, datasetDraftModified=dataset_draft_modified, version=version, host=dataverse_host, hostCustomPublishText=host_custom_publish_text, private_key=kwargs.get('view_only', None), )]