def dataverse_set_config(node_addon, auth, **kwargs):
"""Saves selected Dataverse and dataset to node settings"""
user_settings = node_addon.user_settings
user = auth.user
if user_settings and user_settings.owner != user:
raise HTTPError(http.FORBIDDEN)
try:
assert_clean(request.json)
except AssertionError:
# TODO: Test me!
raise HTTPError(http.NOT_ACCEPTABLE)
alias = request.json.get('dataverse', {}).get('alias')
doi = request.json.get('dataset', {}).get('doi')
if doi is None or alias is None:
return HTTPError(http.BAD_REQUEST)
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, alias)
dataset = client.get_dataset(dataverse, doi)
node_addon.set_folder(dataverse, dataset, auth)
return {'dataverse': dataverse.title, 'dataset': dataset.title}, http.OK
def serialized_node_settings(self):
result = super(DataverseSerializer, self).serialized_node_settings
result['hosts'] = DEFAULT_HOSTS
# Update with Dataverse specific fields
if self.node_settings.has_auth:
external_account = self.node_settings.external_account
dataverse_host = external_account.oauth_key
connection = client.connect_from_settings(self.node_settings)
dataverses = client.get_dataverses(connection)
result.update({
'dataverseHost': dataverse_host,
'connected': connection is not None,
'dataverses': [
{'title': dataverse.title, 'alias': dataverse.alias}
for dataverse in dataverses
],
'savedDataverse': {
'title': self.node_settings.dataverse,
'alias': self.node_settings.dataverse_alias,
},
'savedDataset': {
'title': self.node_settings.dataset,
'doi': self.node_settings.dataset_doi,
}
})
return result
def dataverse_set_config(node_addon, auth, **kwargs):
"""Saves selected Dataverse and dataset to node settings"""
user_settings = node_addon.user_settings
user = auth.user
if user_settings and user_settings.owner != user:
raise HTTPError(http.FORBIDDEN)
try:
assert_clean(request.json)
except AssertionError:
# TODO: Test me!
raise HTTPError(http.NOT_ACCEPTABLE)
alias = request.json.get('dataverse', {}).get('alias')
doi = request.json.get('dataset', {}).get('doi')
if doi is None or alias is None:
return HTTPError(http.BAD_REQUEST)
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, alias)
dataset = client.get_dataset(dataverse, doi)
node_addon.set_folder(dataverse, dataset, auth)
return {'dataverse': dataverse.title, 'dataset': dataset.title}, http.OK
def dataverse_set_config(node_addon, auth, **kwargs):
"""Saves selected Dataverse and dataset to node settings"""
user_settings = node_addon.user_settings
user = auth.user
if user_settings and user_settings.owner != user:
raise HTTPError(http_status.HTTP_403_FORBIDDEN)
alias = request.json.get('dataverse', {}).get('alias')
doi = request.json.get('dataset', {}).get('doi')
if doi is None or alias is None:
return HTTPError(http_status.HTTP_400_BAD_REQUEST)
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, alias)
dataset = client.get_dataset(dataverse, doi)
node_addon.set_folder(dataverse, dataset, auth)
return {
'dataverse': dataverse.title,
'dataset': dataset.title
}, http_status.HTTP_200_OK
def test_connect_from_settings(self, mock_connect):
node_settings = NodeSettings()
node_settings.external_account = create_external_account(
self.host, self.token,
)
connection = connect_from_settings(node_settings)
assert_true(connection)
mock_connect.assert_called_once_with(self.host, self.token)
def test_connect_from_settings(self, mock_connect):
node_settings = NodeSettings()
node_settings.external_account = create_external_account(
self.host,
self.token,
)
connection = connect_from_settings(node_settings)
assert_true(connection)
mock_connect.assert_called_once_with(self.host, self.token)
def dataverse_get_datasets(node_addon, **kwargs):
"""Get list of datasets from provided Dataverse alias"""
alias = request.json.get('alias')
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, alias)
datasets = client.get_datasets(dataverse)
ret = {
'alias': alias, # include alias to verify dataset container
'datasets': [{'title': dataset.title, 'doi': dataset.doi} for dataset in datasets],
}
return ret, http.OK
def test_connect_from_settings_none(self):
connection = connect_from_settings(None)
assert_is_none(connection)
def test_connect_from_settings_none(self):
connection = connect_from_settings(None)
assert_is_none(connection)
def _dataverse_root_folder(node_addon, auth, **kwargs):
node = node_addon.owner
default_version = 'latest-published'
version = 'latest-published' if not node.can_edit(
auth) else default_version
# Quit if no dataset linked
if not node_addon.complete:
return []
can_edit = node.can_edit(auth)
permissions = {
'edit': can_edit and not node.is_registration,
'view': node.can_view(auth)
}
try:
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection,
node_addon.dataverse_alias)
dataset = client.get_dataset(dataverse, node_addon.dataset_doi)
except SSLError:
return [
rubeus.build_addon_root(
node_addon,
node_addon.dataset,
permissions=permissions,
private_key=kwargs.get('view_only', None),
)
]
# Quit if doi does not produce a dataset
if dataset is None:
return []
published_files = client.get_files(dataset, published=True)
# Produce draft version or quit if no published version is available
if not published_files:
if can_edit:
version = 'latest'
else:
return []
urls = {
'publish': node.api_url_for('dataverse_publish_dataset'),
}
# determine if there are any changes between the published and draft
# versions of the dataset
try:
dataset.get_metadata('latest-published')
dataset_is_published = True
dataset_draft_modified = dataset.get_state() == 'DRAFT'
except VersionJsonNotFoundError:
dataset_is_published = False
dataset_draft_modified = True
# Get the dataverse host
# (stored in oauth_key because dataverse doesn't use that)
dataverse_host = node_addon.external_account.oauth_key
try:
host_custom_publish_text = client.get_custom_publish_text(connection)
except OperationFailedError:
host_custom_publish_text = ''
return [
rubeus.build_addon_root(
node_addon,
node_addon.dataset,
urls=urls,
permissions=permissions,
dataset=node_addon.dataset,
doi=dataset.doi,
dataverse=dataverse.title,
hasPublishedFiles=bool(published_files),
dataverseIsPublished=dataverse.is_published,
datasetIsPublished=dataset_is_published,
datasetDraftModified=dataset_draft_modified,
version=version,
host=dataverse_host,
hostCustomPublishText=host_custom_publish_text,
private_key=kwargs.get('view_only', None),
)
]
def _dataverse_root_folder(node_addon, auth, **kwargs):
node = node_addon.owner
default_version = 'latest-published'
version = 'latest-published' if not node.can_edit(auth) else default_version
# Quit if no dataset linked
if not node_addon.complete:
return []
can_edit = node.can_edit(auth)
permissions = {
'edit': can_edit and not node.is_registration,
'view': node.can_view(auth)
}
try:
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, node_addon.dataverse_alias)
dataset = client.get_dataset(dataverse, node_addon.dataset_doi)
except SSLError:
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
permissions=permissions,
private_key=kwargs.get('view_only', None),
)]
# Quit if doi does not produce a dataset
if dataset is None:
return []
published_files = client.get_files(dataset, published=True)
# Produce draft version or quit if no published version is available
if not published_files:
if can_edit:
version = 'latest'
else:
return []
urls = {
'publish': node.api_url_for('dataverse_publish_dataset'),
}
# determine if there are any changes between the published and draft
# versions of the dataset
try:
dataset.get_metadata('latest-published')
dataset_is_published = True
dataset_draft_modified = dataset.get_state() == 'DRAFT'
except VersionJsonNotFoundError:
dataset_is_published = False
dataset_draft_modified = True
# Get the dataverse host
# (stored in oauth_key because dataverse doesn't use that)
dataverse_host = node_addon.external_account.oauth_key
try:
host_custom_publish_text = client.get_custom_publish_text(connection)
except OperationFailedError:
host_custom_publish_text = ''
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
urls=urls,
permissions=permissions,
dataset=node_addon.dataset,
doi=dataset.doi,
dataverse=dataverse.title,
hasPublishedFiles=bool(published_files),
dataverseIsPublished=dataverse.is_published,
datasetIsPublished=dataset_is_published,
datasetDraftModified=dataset_draft_modified,
version=version,
host=dataverse_host,
hostCustomPublishText=host_custom_publish_text,
private_key=kwargs.get('view_only', None),
)]
