def test_casava(self): """Check AnalysisDir against CASAVA-style output """ mockdir = MockAnalysisDirFactory.casava( '160621_M00879_0087_000000000-AGEW9', 'miseq', top_dir=self.dirn) mockdir.create() analysis_dir = AnalysisDir(mockdir.dirn) self.assertEqual(analysis_dir.run_name,mockdir.run_name) self.assertEqual(analysis_dir.n_sequencing_data,1) self.assertEqual(analysis_dir.n_projects,2) self.assertTrue(analysis_dir.paired_end)