def test_casava(self):
"""Check AnalysisDir against CASAVA-style output
"""
mockdir = MockAnalysisDirFactory.casava(
'160621_M00879_0087_000000000-AGEW9',
'miseq',
top_dir=self.dirn)
mockdir.create()
analysis_dir = AnalysisDir(mockdir.dirn)
self.assertEqual(analysis_dir.run_name,mockdir.run_name)
self.assertEqual(analysis_dir.n_sequencing_data,1)
self.assertEqual(analysis_dir.n_projects,2)
self.assertTrue(analysis_dir.paired_end)
