def setUp(self): """ define a default variant (currently a SNV) """ chrom = "1" pos = "15000000" snp_id = "." ref = "A" alt = "G" filt = "PASS" self.var = Variant(chrom, pos, snp_id, ref, alt, filt)
def setUp(self): """ define a default variant (currently a SNV) """ chrom = "1" pos = "15000000" snp_id = "." ref = "A" alt = "G" qual = "1000" filt = "PASS" info = 'AC=1;HGNC=TEST' keys = 'GT:DP:AD' sample = '0/1:40:10,10' self.var = Variant(chrom, pos, snp_id, ref, alt, qual, filt, info, keys, sample)