def setUp(self):
""" define a default variant (currently a SNV)
"""
chrom = "1"
pos = "15000000"
snp_id = "."
ref = "A"
alt = "G"
filt = "PASS"
self.var = Variant(chrom, pos, snp_id, ref, alt, filt)
def setUp(self):
""" define a default variant (currently a SNV)
"""
chrom = "1"
pos = "15000000"
snp_id = "."
ref = "A"
alt = "G"
qual = "1000"
filt = "PASS"
info = 'AC=1;HGNC=TEST'
keys = 'GT:DP:AD'
sample = '0/1:40:10,10'
self.var = Variant(chrom, pos, snp_id, ref, alt, qual, filt, info,
keys, sample)
