def test_gainloss(self):
probes = cnvlib.read("formats/amplicon.cnr")
rows = commands.do_gainloss(probes, male_reference=True)
self.assertTrue(len(rows) > 0)
segs = segmentation.do_segmentation("formats/amplicon.cnr", False,
"haar")
rows = commands.do_gainloss(probes, segs, True, 0.3, 4)
self.assertTrue(len(rows) > 0)
def test_gainloss(self):
"""The 'gainloss' command."""
probes = cnvlib.read("formats/amplicon.cnr")
rows = commands.do_gainloss(probes, male_reference=True)
self.assertGreater(len(rows), 0)
segs = cnvlib.read("formats/amplicon.cns")
rows = commands.do_gainloss(probes, segs, True, 0.3, 4)
self.assertGreater(len(rows), 0)
def test_gainloss(self):
"""The 'gainloss' command."""
probes = cnvlib.read("formats/amplicon.cnr")
rows = commands.do_gainloss(probes, male_reference=True)
self.assertGreater(len(rows), 0)
segs = cnvlib.read("formats/amplicon.cns")
rows = commands.do_gainloss(probes, segs, True, 0.3, 4)
self.assertGreater(len(rows), 0)
