def test_gainloss(self): probes = cnvlib.read("formats/amplicon.cnr") rows = commands.do_gainloss(probes, male_reference=True) self.assertTrue(len(rows) > 0) segs = segmentation.do_segmentation("formats/amplicon.cnr", False, "haar") rows = commands.do_gainloss(probes, segs, True, 0.3, 4) self.assertTrue(len(rows) > 0)
def test_gainloss(self): """The 'gainloss' command.""" probes = cnvlib.read("formats/amplicon.cnr") rows = commands.do_gainloss(probes, male_reference=True) self.assertGreater(len(rows), 0) segs = cnvlib.read("formats/amplicon.cns") rows = commands.do_gainloss(probes, segs, True, 0.3, 4) self.assertGreater(len(rows), 0)