def _putToDict():
oddPortError = odd()
lstPortErrLines = self.strPorterrshow.split('\n')
for intPortNum in self._allSWPort:
lstErrInfo = _getErrorAsList(intPortNum, lstPortErrLines)
oddPortError[str(intPortNum)] = lstErrInfo
self._dicPartPortError = oddPortError
def _dict_string_to_int(self, dicPE):
dicIntPE = odd()
if dicPE:
for i in range(len(dicPE.values())):
port = dicPE.keys()[i]
lstPortError = dicPE.values()[i]
dicIntPE[port] = self.list_string_to_int(lstPortError)
return dicIntPE
def _get_oddCommand(intTraceLevel):
oddCMD = odd()
if intTraceLevel == 1 or intTraceLevel == 2 or intTraceLevel == 3:
oddCMD['Trace'] = 'ftpprep trace'
if intTraceLevel == 2 or intTraceLevel == 3:
oddCMD['Primary'] = 'ftpprep coredump primary all'
if intTraceLevel == 3:
oddCMD['Secondary'] = 'ftpprep coredump secondary all'
return oddCMD
else:
print('Trace level must be: 1 or 2 or 3, please refer "Config.ini" ')
#!/usr/bin/python
import sys
import re
from sys import argv
from collections import OrderedDict as odd
#Add sample id to the master strawberry table. Only perfect case-blind matches accepted.
script, crown_rot_tb, samples_tb = argv
crown_rot = odd()
#Read in the list of the cultivars in the crown rot GWAS table.
with open(crown_rot_tb) as crown_rot_tb_h:
for line in crown_rot_tb_h:
fields = line.strip().split("\t")
#Convert to lower-case:
search_token = fields[0].lower()
crown_rot[search_token] = line.strip()
#read in the samples table
samples = dd()
with open(samples_tb) as samples_tb_h:
for line in samples_tb_h:
lines = line.strip().split("\t")
samples[line.lower()] = lines
#print crown_rot.keys()
#print the results
matching_ids = dd(list)
for my_id in crown_rot.keys():
for my_sample in samples.keys():
if re.search(my_id, my_sample):
matching_ids[my_id].append(samples[my_sample][0])
