def __init__(self,name,dirname,fname,fans):
# name is used as log file name
# dirname is location saving log file
self._name = name
self._dir = dirname
#pssm = pssm2feature2.pssm(fname)
self._starts = {idch:start for idch,start,seq in seq2feature.fasta2seq(fname)}
if fans is not None:
self._ans = util.ans(fans)
def __init__(self, name, dirname, fname, fans):
self._name = name
self._dir = dirname
self._ans = util.ans(fans)
pssmpp = pssm2feature2.pssm(fname, length=1)
self.starts = {
idch: start
for idch, start, v_pssmpp in pssmpp.parse_pssm4pos()
}
def __init__(self,name,dirname,fname,fans):
self._name = name
self._dir = dirname
self._ans = util.ans(fans)
pssmpp = pssm2feature2.pssm(fname,length = 1)
self.starts = {idch:start for idch,start,v_pssmpp in pssmpp.parse_pssm4pos()}
def __init__(self,name,dirname,fname,fans): valid3.__init__(self,name,dirname,fname) if fans is not None: self._ans = util.ans(fans)
def __init__(self, name, dirname, fname, fans):
valid3.__init__(self, name, dirname, fname)
if fans is not None:
self._ans = util.ans(fans)
