def __init__(self,name,dirname,fname,fans): # name is used as log file name # dirname is location saving log file self._name = name self._dir = dirname #pssm = pssm2feature2.pssm(fname) self._starts = {idch:start for idch,start,seq in seq2feature.fasta2seq(fname)} if fans is not None: self._ans = util.ans(fans)
def __init__(self, name, dirname, fname, fans): self._name = name self._dir = dirname self._ans = util.ans(fans) pssmpp = pssm2feature2.pssm(fname, length=1) self.starts = { idch: start for idch, start, v_pssmpp in pssmpp.parse_pssm4pos() }
def __init__(self,name,dirname,fname,fans): self._name = name self._dir = dirname self._ans = util.ans(fans) pssmpp = pssm2feature2.pssm(fname,length = 1) self.starts = {idch:start for idch,start,v_pssmpp in pssmpp.parse_pssm4pos()}
def __init__(self,name,dirname,fname,fans): valid3.__init__(self,name,dirname,fname) if fans is not None: self._ans = util.ans(fans)
def __init__(self, name, dirname, fname, fans): valid3.__init__(self, name, dirname, fname) if fans is not None: self._ans = util.ans(fans)