Ejemplos de database_connection_neo4j en Python

Ejemplo n.º 1

def database_connection():
    # create connection with mysql database
    global con
    con = create_connection_to_databases.database_connection_umls()

    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 2

Archivo: integrate_gene_relationships.py Proyecto: ckoenigs/master_database_change

def database_connection():
    """
    create connection to neo4j
    :return:
    """
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 3

def create_connection_with_neo4j_mysql():
    global g
    g = create_connection_to_databases.database_connection_neo4j()

    # create connection with mysql database
    global con
    con = create_connection_to_databases.database_connection_umls()

Ejemplo n.º 4

def create_connection_with_neo4j():
    '''
    create a connection with neo4j
    '''
    # set up authentication parameters and connection
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 5

Archivo: add_information_from_a_not_existing_node_to_existing_node.py Proyecto: ckoenigs/master_database_change

def database_connection():
    # create connection with mysql database
    # global con
    # con = mdb.connect('127.0.0.1', 'root', 'Za8p7Tf', 'umls')

    # authenticate("localhost:7474", )
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 6

Archivo: mapping_gene_protein_edge_disgenet.py Proyecto: ckoenigs/master_database_change

def create_connection_with_neo4j():
    '''
    create a connection with neo4j
    '''
    # set up authentication parameters and connection
    # authenticate("localhost:7474", "neo4j", "test")
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 7

Archivo: integrate_and_map_CTD_disease_to_Hetionet_disease_new.py Proyecto: ckoenigs/master_database_change

def create_connection_with_neo4j_mysql():
    # create connection with neo4j
    # authenticate("localhost:7474", "neo4j", "test")
    global g
    g = create_connection_to_databases.database_connection_neo4j()

    # create connection with mysql database
    global con
    con = create_connection_to_databases.database_connection_umls()

Ejemplo n.º 8

def create_connection_with_neo4j_mysql():
    # create connection with neo4j
    # authenticate("localhost:7474", "neo4j", "test")
    # global g
    # g = Graph("http://localhost:7474/db/data/")

    # authenticate("bimi:7475", "ckoenigs", "test")
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 9

def create_connection_with_neo4j_mysql():
    global g
    g = create_connection_to_databases.database_connection_neo4j()

    # create connection with mysql database
    global con
    con = create_connection_to_databases.database_connection_umls()

    # generate connection to mysql to RxNorm database
    global conRxNorm
    conRxNorm = create_connection_to_databases.database_connection_RxNorm()

Ejemplo n.º 10

def create_connection_with_neo4j_and_mysql():
    # set up authentication parameters and connection
    global g
    g = create_connection_to_databases.database_connection_neo4j()

    # create connection with mysql database
    global con
    con = create_connection_to_databases.database_connection_umls()

    # generate connection to mysql to RxNorm database
    global conRxNorm
    conRxNorm = create_connection_to_databases.database_connection_RxNorm()

Ejemplo n.º 11

import csv, datetime, sys

sys.path.append("../..")
import create_connection_to_databases

# check why 20 edges of RNA-RNA inter are not integrated

print(datetime.datetime.now(), 'load ids from neo4j')
g = create_connection_to_databases.database_connection_neo4j()

set_of_ids_in_neo4j = set()
query = 'MATCH (n:rna_RNAInter) RETURN n.Raw_ID '
results = g.run(query)
for raw_id, in results:
    set_of_ids_in_neo4j.add(raw_id)

print(datetime.datetime.now(), 'load ids from file')

file = open('data/Download_data_RR.txt', 'r', encoding='utf-8')
csv_reader = csv.DictReader(file, delimiter='\t')

set_rna_ids = set()
set_where_no_raw_id = set()


def get_the_identifier(raw_id_name, symbol, row):
    raw_id = row[raw_id_name]
    if raw_id == 'N/A':
        gene_symbol = row[symbol]
        set_where_no_raw_id.add(gene_symbol)
        raw_id = gene_symbol

Ejemplo n.º 12

def create_connection_with_neo4j_mysql():
    # create connection with neo4j
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 13

def create_connetion_with_neo4j():
    # set up authentication parameters and connection
    # authenticate("localhost:7474", )
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 14

def create_connection_with_neo4j_mysql():
    # create connection with neo4j
    # authenticate("localhost:7474", )
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 15

def create_connection_with_neo4j():
    # set up authentication parameters and connection
    # authenticate("localhost:7474", "neo4j", "test")
    return create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 16

def database_connection():
    # authenticate("localhost:7474", )
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 17

def database_connection():
    '''
    create connection to neo4j
    '''
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 18

def create_connection_with_neo4j():
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 19

def create_connection_with_neo4j_and_mysql():
    # set up authentication parameters and connection
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 20

def create_connection_with_neo4j():
    '''
    create a connection with neo4j
    '''
    global g
    g = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 21

Archivo: CreateEdgeReactionToPhysicalEntity.py Proyecto: ckoenigs/master_database_change

def create_connection_with_neo4j():
    # set up authentication parameters and connection
    global graph_database
    graph_database = create_connection_to_databases.database_connection_neo4j()

Ejemplo n.º 22

Archivo: integrat_hpo_disease_symptom_rela.py Proyecto: ckoenigs/master_database_change

def database_connection():
    # create connection with neo4j database

    global g
    g = create_connection_to_databases.database_connection_neo4j()