def database_connection(): # create connection with mysql database global con con = create_connection_to_databases.database_connection_umls() global g g = create_connection_to_databases.database_connection_neo4j()
def database_connection(): """ create connection to neo4j :return: """ global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j_mysql(): global g g = create_connection_to_databases.database_connection_neo4j() # create connection with mysql database global con con = create_connection_to_databases.database_connection_umls()
def create_connection_with_neo4j(): ''' create a connection with neo4j ''' # set up authentication parameters and connection global g g = create_connection_to_databases.database_connection_neo4j()
def database_connection(): # create connection with mysql database # global con # con = mdb.connect('127.0.0.1', 'root', 'Za8p7Tf', 'umls') # authenticate("localhost:7474", ) global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j(): ''' create a connection with neo4j ''' # set up authentication parameters and connection # authenticate("localhost:7474", "neo4j", "test") global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j_mysql(): # create connection with neo4j # authenticate("localhost:7474", "neo4j", "test") global g g = create_connection_to_databases.database_connection_neo4j() # create connection with mysql database global con con = create_connection_to_databases.database_connection_umls()
def create_connection_with_neo4j_mysql(): # create connection with neo4j # authenticate("localhost:7474", "neo4j", "test") # global g # g = Graph("http://localhost:7474/db/data/") # authenticate("bimi:7475", "ckoenigs", "test") global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j_mysql(): global g g = create_connection_to_databases.database_connection_neo4j() # create connection with mysql database global con con = create_connection_to_databases.database_connection_umls() # generate connection to mysql to RxNorm database global conRxNorm conRxNorm = create_connection_to_databases.database_connection_RxNorm()
def create_connection_with_neo4j_and_mysql(): # set up authentication parameters and connection global g g = create_connection_to_databases.database_connection_neo4j() # create connection with mysql database global con con = create_connection_to_databases.database_connection_umls() # generate connection to mysql to RxNorm database global conRxNorm conRxNorm = create_connection_to_databases.database_connection_RxNorm()
import csv, datetime, sys sys.path.append("../..") import create_connection_to_databases # check why 20 edges of RNA-RNA inter are not integrated print(datetime.datetime.now(), 'load ids from neo4j') g = create_connection_to_databases.database_connection_neo4j() set_of_ids_in_neo4j = set() query = 'MATCH (n:rna_RNAInter) RETURN n.Raw_ID ' results = g.run(query) for raw_id, in results: set_of_ids_in_neo4j.add(raw_id) print(datetime.datetime.now(), 'load ids from file') file = open('data/Download_data_RR.txt', 'r', encoding='utf-8') csv_reader = csv.DictReader(file, delimiter='\t') set_rna_ids = set() set_where_no_raw_id = set() def get_the_identifier(raw_id_name, symbol, row): raw_id = row[raw_id_name] if raw_id == 'N/A': gene_symbol = row[symbol] set_where_no_raw_id.add(gene_symbol) raw_id = gene_symbol
def create_connection_with_neo4j_mysql(): # create connection with neo4j global g g = create_connection_to_databases.database_connection_neo4j()
def create_connetion_with_neo4j(): # set up authentication parameters and connection # authenticate("localhost:7474", ) global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j_mysql(): # create connection with neo4j # authenticate("localhost:7474", ) global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j(): # set up authentication parameters and connection # authenticate("localhost:7474", "neo4j", "test") return create_connection_to_databases.database_connection_neo4j()
def database_connection(): # authenticate("localhost:7474", ) global g g = create_connection_to_databases.database_connection_neo4j()
def database_connection(): ''' create connection to neo4j ''' global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j(): global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j_and_mysql(): # set up authentication parameters and connection global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j(): ''' create a connection with neo4j ''' global g g = create_connection_to_databases.database_connection_neo4j()
def create_connection_with_neo4j(): # set up authentication parameters and connection global graph_database graph_database = create_connection_to_databases.database_connection_neo4j()
def database_connection(): # create connection with neo4j database global g g = create_connection_to_databases.database_connection_neo4j()