def test_convert_directory2(self):
tmp_output_dir = tempfile.mkdtemp()
try:
convert_directory.convert_directory("/Users/abrys/Downloads/dicom_T1_UNKNOWN_2",
"/Users/abrys/Downloads")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory(self):
tmp_output_dir = tempfile.mkdtemp()
try:
convert_directory.convert_directory(test_data.GENERIC_ANATOMICAL, tmp_output_dir)
assert os.path.isfile(os.path.join(tmp_output_dir, '4_dicom2nifti.nii.gz'))
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory2(self):
tmp_output_dir = tempfile.mkdtemp()
try:
convert_directory.convert_directory("/Users/abrys/Downloads/test",
"/Users/abrys/Downloads")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_dti_12(self):
tmp_output_dir = tempfile.mkdtemp()
os.makedirs('/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700', exist_ok=True)
try:
convert_directory.convert_directory('/Users/abrys/Documents/data/dcm2nii_dti/JB_b700',
'/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700')
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory2(self):
tmp_output_dir = tempfile.mkdtemp()
try:
import pydicom
# headers = pydicom.read_file("/Users/abrys/Downloads/failing_cases/test.dcm")
convert_directory.convert_directory("/Users/abrys/Downloads/Agfa",
"/Users/abrys/Downloads/Agfa")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory3(self):
tmp_output_dir = tempfile.mkdtemp()
try:
import pydicom
settings.disable_validate_slicecount()
convert_directory.convert_directory(
"/Users/abrys/Downloads/single_slice",
"/Users/abrys/Downloads/single_slice")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_dti_12(self):
tmp_output_dir = tempfile.mkdtemp()
os.makedirs('/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700',
exist_ok=True)
try:
convert_directory.convert_directory(
'/Users/abrys/Documents/data/dcm2nii_dti/JB_b700',
'/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700')
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory(self):
tmp_output_dir = tempfile.mkdtemp()
try:
settings.enable_resampling()
settings.set_resample_spline_interpolation_order(1)
settings.set_resample_padding(-1000)
settings.disable_validate_slice_increment()
settings.disable_validate_orthogonal()
convert_directory.convert_directory("/Users/abrys/Downloads/dicom_CT_UNKNOWN_3",
"/Users/abrys/Downloads")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory(self):
tmp_output_dir = tempfile.mkdtemp()
try:
settings.enable_resampling()
settings.set_resample_spline_interpolation_order(1)
settings.set_resample_padding(-1000)
settings.disable_validate_slice_increment()
settings.disable_validate_orthogonal()
convert_directory.convert_directory("/Users/abrys/Downloads/test",
"/Users/abrys/Downloads")
finally:
shutil.rmtree(tmp_output_dir)
tmp_output_dir = tempfile.mkdtemp()
try:
import pydicom
# headers = pydicom.read_file("/Users/abrys/Downloads/failing_cases/test.dcm")
convert_directory.convert_directory("/Users/abrys/Downloads/Agfa",
"/Users/abrys/Downloads/Agfa")
finally:
shutil.rmtree(tmp_output_dir)
def test_convert_directory3(self):
tmp_output_dir = tempfile.mkdtemp()
try:
import pydicom
settings.disable_validate_slicecount()
convert_directory.convert_directory(
"/Users/abrys/Downloads/single_slice",
"/Users/abrys/Downloads/single_slice")
finally:
shutil.rmtree(tmp_output_dir)
if __name__ == '__main__':
convert_directory.convert_directory("/Users/abrys/Downloads/Agfa",
"/Users/abrys/Downloads/Agfa")
# unittest.main()
def main():
print('TEST')
convert_directory.convert_directory("/Users/abrys/Downloads/Agfa",
"/Users/abrys/Downloads/Agfa")