def test18(): """Test to make sure it creates a file that is readable""" L = [dnaSeq.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)] for d in L: d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)]) dnaSeq.writeFA(L, "test1.fa") L2 = dnaSeq.readFA("test1.fa") return all([o1.info.lstrip('>').strip()==o2.info.lstrip('>').strip() and str(o1)==str(o2) for o1,o2 in zip(L,L2)])
def test17(): L = [dnaSeq_sol.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)] for d in L: d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)]) dnaSeq_sol.writeFA(L, "test.fa") L2 = dnaSeq.readFA("test.fa") return all([o1.info.lstrip('>').strip()==o2.info.lstrip('>').strip() and str(o1)==str(o2) for o1,o2 in zip(L,L2)])
def test18(): """Test to make sure it creates a file that is readable""" L = [dnaSeq.dnaSeq(randomSeq(random.randint(300, 600))) for i in range(5)] for d in L: d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)]) dnaSeq.writeFA(L, "test1.fa") L2 = dnaSeq.readFA("test1.fa") return all([ o1.info.lstrip('>').strip() == o2.info.lstrip('>').strip() and str(o1) == str(o2) for o1, o2 in zip(L, L2) ])
def test17(): L = [ dnaSeq_sol.dnaSeq(randomSeq(random.randint(300, 600))) for i in range(5) ] for d in L: d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)]) dnaSeq_sol.writeFA(L, "test.fa") L2 = dnaSeq.readFA("test.fa") return all([ o1.info.lstrip('>').strip() == o2.info.lstrip('>').strip() and str(o1) == str(o2) for o1, o2 in zip(L, L2) ])
def readTest(self): fileseqs = dnaSeq.readFA("tester.fa") self.assertTrue(all([str(fileseqs[i]) == str(self.seqs[i]) and self.seqs[i].info in fileseqs[i].info for i in range(len(self.seqs))]), "Info and sequences read from tester.fa did not match expected results")