def test18():
"""Test to make sure it creates a file that is readable"""
L = [dnaSeq.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq.writeFA(L, "test1.fa")
L2 = dnaSeq.readFA("test1.fa")
return all([o1.info.lstrip('>').strip()==o2.info.lstrip('>').strip() and str(o1)==str(o2) for o1,o2 in zip(L,L2)])
def test17():
L = [dnaSeq_sol.dnaSeq(randomSeq(random.randint(300,600))) for i in range(5)]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test.fa")
L2 = dnaSeq.readFA("test.fa")
return all([o1.info.lstrip('>').strip()==o2.info.lstrip('>').strip() and str(o1)==str(o2) for o1,o2 in zip(L,L2)])
def test18():
"""Test to make sure it creates a file that is readable"""
L = [dnaSeq.dnaSeq(randomSeq(random.randint(300, 600))) for i in range(5)]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq.writeFA(L, "test1.fa")
L2 = dnaSeq.readFA("test1.fa")
return all([
o1.info.lstrip('>').strip() == o2.info.lstrip('>').strip()
and str(o1) == str(o2) for o1, o2 in zip(L, L2)
])
def test17():
L = [
dnaSeq_sol.dnaSeq(randomSeq(random.randint(300, 600)))
for i in range(5)
]
for d in L:
d.info = ">" + "".join([random.choice("ABCDEFH ") for i in range(30)])
dnaSeq_sol.writeFA(L, "test.fa")
L2 = dnaSeq.readFA("test.fa")
return all([
o1.info.lstrip('>').strip() == o2.info.lstrip('>').strip()
and str(o1) == str(o2) for o1, o2 in zip(L, L2)
])
def readTest(self):
fileseqs = dnaSeq.readFA("tester.fa")
self.assertTrue(all([str(fileseqs[i]) == str(self.seqs[i]) and self.seqs[i].info in fileseqs[i].info for i in range(len(self.seqs))]), "Info and sequences read from tester.fa did not match expected results")
