def setUp(self): import_holidays() self.panel_one = Panel.objects.create(name='one') register_to_site_reference_configs() site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) site_reference_configs.register_from_visit_schedule( visit_models={ 'edc_appointment.appointment': 'edc_metadata.subjectvisit'}) self.subject_identifier = '1111111' subject_consent = SubjectConsent.objects.create( subject_identifier=self.subject_identifier, consent_datetime=get_utcnow()) _, self.schedule = site_visit_schedules.get_by_onschedule_model( 'edc_metadata.onschedule') self.schedule.put_on_schedule( subject_identifier=self.subject_identifier, onschedule_datetime=subject_consent.consent_datetime) self.appointment = Appointment.objects.get( subject_identifier=self.subject_identifier, visit_code=self.schedule.visits.first.code) self.subject_visit = SubjectVisit.objects.create( appointment=self.appointment, subject_identifier=self.subject_identifier, reason=SCHEDULED)
def setUp(self): self.panel_one = Panel.objects.create(name="one") site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) register_to_site_reference_configs() site_reference_configs.register_from_visit_schedule( visit_models={ "edc_appointment.appointment": "edc_metadata.subjectvisit" }) self.subject_identifier = "1111111" subject_consent = SubjectConsent.objects.create( subject_identifier=self.subject_identifier, consent_datetime=get_utcnow()) _, self.schedule = site_visit_schedules.get_by_onschedule_model( "edc_metadata.onschedule") self.schedule.put_on_schedule( subject_identifier=self.subject_identifier, onschedule_datetime=subject_consent.consent_datetime, ) self.appointment = Appointment.objects.get( subject_identifier=self.subject_identifier, visit_code=self.schedule.visits.first.code, ) self.subject_visit = SubjectVisit.objects.create( appointment=self.appointment, subject_identifier=self.subject_identifier, reason=SCHEDULED, )
def setUp(self): self.panel_one = Panel.objects.create(name="one") self.panel_two = Panel.objects.create(name="two") for name in ["three", "four", "five", "six"]: Panel.objects.create(name=name) site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) register_to_site_reference_configs() site_reference_configs.register_from_visit_schedule( visit_models={"edc_appointment.appointment": "edc_metadata.subjectvisit"} ) self.subject_identifier = "1111111" self.assertEqual(CrfMetadata.objects.all().count(), 0) self.assertEqual(RequisitionMetadata.objects.all().count(), 0) subject_consent = SubjectConsent.objects.create( subject_identifier=self.subject_identifier, consent_datetime=get_utcnow() ) _, self.schedule = site_visit_schedules.get_by_onschedule_model( "edc_metadata.onschedule" ) self.schedule.put_on_schedule( subject_identifier=self.subject_identifier, onschedule_datetime=subject_consent.consent_datetime, ) self.appointment = Appointment.objects.get( subject_identifier=self.subject_identifier, visit_code=self.schedule.visits.first.code, )
def enroll(subject_identifier=None): subject_identifier = subject_identifier or "1111111" site_reference_configs.registry = {} reference = ReferenceModelConfig( name="edc_action_item.CrfLongitudinalOne", fields=["f1", "f2", "f3"]) site_reference_configs.register(reference) site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) site_reference_configs.register_from_visit_schedule( visit_models={ "edc_appointment.appointment": "edc_metadata.subjectvisit" }) subject_consent = SubjectConsent.objects.create( subject_identifier=subject_identifier, consent_datetime=get_utcnow()) _, schedule = site_visit_schedules.get_by_onschedule_model( "edc_metadata.onschedule") schedule.put_on_schedule( subject_identifier=subject_consent.subject_identifier, onschedule_datetime=subject_consent.consent_datetime, ) return subject_identifier
def setUp(self): import_holidays() register_to_site_reference_configs() for name in ['one', 'two', 'three', 'four', 'five', 'six']: Panel.objects.create(name=name) site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) site_reference_configs.register_from_visit_schedule( visit_models={ 'edc_appointment.appointment': 'edc_metadata.subjectvisit'}) self.subject_identifier = '1111111' self.assertEqual(CrfMetadata.objects.all().count(), 0) self.assertEqual(RequisitionMetadata.objects.all().count(), 0) subject_consent = SubjectConsent.objects.create( subject_identifier=self.subject_identifier, consent_datetime=get_utcnow()) _, self.schedule = site_visit_schedules.get_by_onschedule_model( 'edc_metadata.onschedule') self.schedule.put_on_schedule( subject_identifier=self.subject_identifier, onschedule_datetime=subject_consent.consent_datetime) self.appointment = Appointment.objects.get( subject_identifier=self.subject_identifier, visit_code=self.schedule.visits.first.code) self.subject_visit = SubjectVisit.objects.create( appointment=self.appointment, subject_identifier=self.subject_identifier, reason=SCHEDULED)
def setUp(self): load_list_data( list_data=list_data, model_name="edc_visit_tracking.subjectvisitmissedreasons", ) self.subject_identifier = "12345" self.helper = self.helper_cls( subject_identifier=self.subject_identifier) crfs = FormsCollection( Crf(show_order=1, model="edc_metadata.crfone", required=True), Crf(show_order=2, model="edc_metadata.crftwo", required=True), Crf(show_order=3, model="edc_metadata.crfthree", required=True), Crf(show_order=4, model="edc_metadata.crffour", required=True), Crf(show_order=5, model="edc_metadata.crffive", required=True), ) crfs_missed = FormsCollection( Crf( show_order=1, model="edc_visit_tracking.subjectvisitmissed", required=True, ), ) visit_schedule1 = VisitSchedule( name="visit_schedule1", offstudy_model="edc_visit_tracking.subjectoffstudy", death_report_model="edc_visit_tracking.deathreport", locator_model="edc_locator.subjectlocator", ) schedule1 = Schedule( name="schedule1", onschedule_model="edc_visit_tracking.onscheduleone", offschedule_model="edc_visit_tracking.offscheduleone", consent_model="edc_visit_tracking.subjectconsent", appointment_model="edc_appointment.appointment", ) visits = [] for index in range(0, 4): visits.append( Visit( code=f"{index + 1}000", title=f"Day {index + 1}", timepoint=index, rbase=relativedelta(days=index), rlower=relativedelta(days=0), rupper=relativedelta(days=6), requisitions=[], crfs=crfs, crfs_missed=crfs_missed, allow_unscheduled=True, )) for visit in visits: schedule1.add_visit(visit) visit_schedule1.add_schedule(schedule1) site_visit_schedules._registry = {} site_visit_schedules.register(visit_schedule=visit_schedule1) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "edc_visit_tracking.subjectvisit" })
def setUp(self): v1_consent = Consent( "visit_schedule_app.subjectconsent", version="1", start=Protocol().study_open_datetime, end=Protocol().study_close_datetime, age_min=18, age_is_adult=18, age_max=64, gender=[MALE, FEMALE], ) import_holidays() site_consents.registry = {} site_consents.register(v1_consent) self.visit_schedule = VisitSchedule( name="visit_schedule", verbose_name="Visit Schedule", offstudy_model="visit_schedule_app.subjectoffstudy", death_report_model="visit_schedule_app.deathreport", ) self.schedule = Schedule( name="schedule", onschedule_model="visit_schedule_app.onschedule", offschedule_model="visit_schedule_app.offschedule", appointment_model="edc_appointment.appointment", consent_model="visit_schedule_app.subjectconsent", ) visit = Visit( code="1000", rbase=relativedelta(days=0), rlower=relativedelta(days=0), rupper=relativedelta(days=6), timepoint=1, ) self.schedule.add_visit(visit) self.visit_schedule.add_schedule(self.schedule) site_visit_schedules._registry = {} site_visit_schedules.register(self.visit_schedule) site_reference_configs.registry = {} site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "visit_schedule_app.subjectvisit" }) self.subject_consent = SubjectConsent.objects.create( subject_identifier="12345", consent_datetime=get_utcnow() - relativedelta(seconds=1), dob=date(1995, 1, 1), identity="11111", confirm_identity="11111", ) self.subject_identifier = self.subject_consent.subject_identifier
def setUp(self): self.subject_identifier = "12345" self.helper = self.helper_cls( subject_identifier=self.subject_identifier) site_visit_schedules._registry = {} site_visit_schedules.register(visit_schedule=visit_schedule1) site_visit_schedules.register(visit_schedule=visit_schedule2) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "edc_visit_tracking.subjectvisit" })
def setUp(self): SubjectVisit.visit_sequence_cls = VisitSequence self.subject_identifier = "12345" self.helper = self.helper_cls( subject_identifier=self.subject_identifier) site_visit_schedules._registry = {} site_visit_schedules.register(visit_schedule=visit_schedule1) site_visit_schedules.register(visit_schedule=visit_schedule2) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "edc_visit_tracking.subjectvisit" }) self.helper.consent_and_put_on_schedule()
def setUp(self): self.panel_one = Panel.objects.create(name=panel_one.name) self.panel_two = Panel.objects.create(name=panel_two.name) self.panel_three = Panel.objects.create(name=panel_three.name) self.panel_four = Panel.objects.create(name=panel_four.name) self.panel_five = Panel.objects.create(name=panel_five.name) self.panel_six = Panel.objects.create(name=panel_six.name) self.panel_seven = Panel.objects.create(name=panel_seven.name) self.panel_eight = Panel.objects.create(name=panel_eight.name) site_visit_schedules._registry = {} site_visit_schedules.loaded = False site_visit_schedules.register(visit_schedule) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "edc_metadata_rules.subjectvisit" }) _, self.schedule = site_visit_schedules.get_by_onschedule_model( "edc_metadata_rules.onschedule") site_metadata_rules.registry = OrderedDict()
def setUp(self): super().setUp() v1_consent = Consent( "visit_schedule_app.subjectconsent", version="1", start=Protocol().study_open_datetime, end=Protocol().study_close_datetime, age_min=18, age_is_adult=18, age_max=64, gender=[MALE, FEMALE], ) import_holidays() site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "visit_schedule_app.subjectvisit" }) site_consents.registry = {} site_consents.register(v1_consent)
def setUp(self): self.subject_identifier = "12345" site_consents.registry = {} site_consents.register(v1_consent) self.helper = self.helper_cls( subject_identifier=self.subject_identifier, subject_consent_model_cls=SubjectConsent, onschedule_model_name="visit_schedule_app.onschedule", ) site_visit_schedules._registry = {} site_visit_schedules.register(visit_schedule=visit_schedule) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "visit_schedule_app.subjectvisit" }) self.helper.consent_and_put_on_schedule() appointment = Appointment.objects.all()[0] self.subject_visit = SubjectVisit.objects.create( appointment=appointment, report_datetime=get_utcnow(), reason=SCHEDULED)
def setUp(self): site_visit_schedules.loaded = False site_visit_schedules._registry = {} site_visit_schedules.register(visit_schedule) site_reference_configs.register_from_visit_schedule(visit_models={ "edc_appointment.appointment": "visit_schedule_app.subjectvisit" }) v1_consent = Consent( "visit_schedule_app.subjectconsent", version="1", start=Protocol().study_open_datetime, end=Protocol().study_close_datetime, age_min=18, age_is_adult=18, age_max=64, gender=[MALE, FEMALE], ) self.subject_identifier = "1234" site_consents.registry = {} site_consents.register(v1_consent)
def register_configs(): site_reference_configs.registry = {} site_reference_configs.loaded = False site_reference_configs.register_from_visit_schedule( visit_models={ "edc_appointment.appointment": "reference_app.subjectvisit" }) reference_config = ReferenceModelConfig( name="reference_app.testmodel", fields=["field_str", "report_datetime"]) site_reference_configs.register(reference_config) reference_config = ReferenceModelConfig( name="reference_app.subjectrequisition.cd4", fields=["panel"]) site_reference_configs.register(reference_config) reference_config = ReferenceModelConfig( name="reference_app.subjectrequisition.vl", fields=["panel"]) site_reference_configs.register(reference_config) reference_config = ReferenceModelConfig( name="reference_app.subjectrequisition.wb", fields=["panel"]) site_reference_configs.register(reference_config) configs = { "reference_app.crfone": [ "field_str", "field_date", "field_datetime", "field_int", ], } for reference_name, fields in configs.items(): site_reference_configs.add_fields_to_config(name=reference_name, fields=fields)
from edc_reference import site_reference_configs from edc_visit_schedule.site_visit_schedules import site_visit_schedules site_reference_configs.register_from_visit_schedule( site_visit_schedules=site_visit_schedules) configs = { 'bcpp_clinic_subject.questionnaire': ['registration_type'], 'bcpp_clinic_subject.viralloadtracking': ['is_drawn']} for model, fields in configs.items(): site_reference_configs.add_fields_to_config(model, fields)
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule( visit_models={ 'edc_appointment.appointment': ['flourish_caregiver.maternalvisit'], 'flourish_child.appointment': ['flourish_child.childvisit'], }) configs = { 'flourish_caregiver.caregivergadanxietyscreening': ['anxiety_score'], 'flourish_caregiver.caregiverphqdeprscreening': ['depression_score', 'self_harm'], 'flourish_caregiver.caregiveredinburghdeprscreening': ['depression_score', 'self_harm'], 'flourish_caregiver.hivdisclosurestatusa': ['disclosed_status'], 'flourish_caregiver.hivdisclosurestatusb': ['disclosed_status'], 'flourish_caregiver.hivdisclosurestatusc': ['disclosed_status'], 'flourish_child.childsociodemographic': ['attend_school', 'working'], 'flourish_child.childphqdepressionscreening': ['depression_score', 'self_harm', 'self_harm_thoughts', 'suidice_attempt'], 'flourish_child.childgadanxietyscreening': ['anxiety_score'], 'flourish_caregiver.hivrapidtestcounseling': ['result_date'], 'flourish_child.birthdata': ['congenital_anomalities'], } for reference_name, fields in configs.items(): site_reference_configs.add_fields_to_config(name=reference_name, fields=fields)
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule(visit_models={ 'edc_appointment.appointment': ['pre_flourish.preflourishcaregivervisit'] })
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule(visit_models={ 'trainee_subject.appointment': ['trainee_subject.subjectvisit'] }) configs = { 'trainee_subject.communityquestionnaire': [ 'community_activities', 'election', 'problems', 'problems_other', 'collaboration' ], 'trainee_subject.educationquestionnaire': ['work_status', 'work_type', 'recent_job', 'previous_earning'], } for reference_name, fields in configs.items(): site_reference_configs.add_fields_to_config(name=reference_name, fields=fields)
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule( visit_models={ 'edc_appointment.appointment': ['td_maternal.maternalvisit'], 'td_infant.appointment': ['td_infant.infantvisit']}) configs = { 'td_maternal.maternalrando': ['rx'], 'td_maternal.maternalultrasoundinitial': ['number_of_gestations', 'edd_confirmed'], 'td_maternal.maternalcontraception': ['srh_referral'], 'td_maternal.rapidtestresult': ['result_date'], 'td_maternal.maternalpostpartumdep': ['laugh'], 'td_maternal.cliniciannotes': ['consent_model'], 'td_infant.infantcliniciannotes': ['consent_model'], 'td_infant.infantnvpdispensing': ['nvp_prophylaxis'], 'td_infant.infantarvproph': ['arv_status'], 'td_infant.infantfu': ['has_dx', 'physical_assessment'], 'td_infant.infantfeeding': ['formula_intro_occur'], 'td_infant.infantbirthdata': ['congenital_anomalities'], 'td_infant.karabotuberculosishistory': ['put_offstudy'] } for reference_name, fields in configs.items(): site_reference_configs.add_fields_to_config( name=reference_name, fields=fields)
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule( visit_models={"edc_appointment.appointment": "inte_subject.subjectvisit"}) # configs = { # "inte_subject.education": ["household_head"], # "inte_subject.patienthistory": ["cd4_date", "viral_load_date"], # "inte_subject.medicalexpenses": ["care_before_hospital"], # "inte_subject.week16": ["patient_alive"], # } # # for reference_name, fields in configs.items(): # site_reference_configs.add_fields_to_config( # name=reference_name, fields=fields)
from edc_reference import site_reference_configs site_reference_configs.register_from_visit_schedule( visit_models={ 'edc_appointment.appointment': 'ambition_subject.subjectvisit' }) configs = { 'ambition_subject.education': ['household_head'], 'ambition_subject.patienthistory': ['cd4_date', 'viral_load_date'], 'ambition_subject.medicalexpenses': ['care_before_hospital'], 'ambition_subject.week16': ['patient_alive'], } for reference_name, fields in configs.items(): site_reference_configs.add_fields_to_config(name=reference_name, fields=fields)