def setUp(self):
import_holidays()
self.panel_one = Panel.objects.create(name='one')
register_to_site_reference_configs()
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': 'edc_metadata.subjectvisit'})
self.subject_identifier = '1111111'
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier,
consent_datetime=get_utcnow())
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
'edc_metadata.onschedule')
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code)
self.subject_visit = SubjectVisit.objects.create(
appointment=self.appointment,
subject_identifier=self.subject_identifier,
reason=SCHEDULED)
def setUp(self):
self.panel_one = Panel.objects.create(name="one")
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
register_to_site_reference_configs()
site_reference_configs.register_from_visit_schedule(
visit_models={
"edc_appointment.appointment": "edc_metadata.subjectvisit"
})
self.subject_identifier = "1111111"
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier,
consent_datetime=get_utcnow())
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata.onschedule")
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code,
)
self.subject_visit = SubjectVisit.objects.create(
appointment=self.appointment,
subject_identifier=self.subject_identifier,
reason=SCHEDULED,
)
def setUp(self):
self.panel_one = Panel.objects.create(name="one")
self.panel_two = Panel.objects.create(name="two")
for name in ["three", "four", "five", "six"]:
Panel.objects.create(name=name)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
register_to_site_reference_configs()
site_reference_configs.register_from_visit_schedule(
visit_models={"edc_appointment.appointment": "edc_metadata.subjectvisit"}
)
self.subject_identifier = "1111111"
self.assertEqual(CrfMetadata.objects.all().count(), 0)
self.assertEqual(RequisitionMetadata.objects.all().count(), 0)
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier, consent_datetime=get_utcnow()
)
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata.onschedule"
)
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code,
)
def enroll(subject_identifier=None):
subject_identifier = subject_identifier or "1111111"
site_reference_configs.registry = {}
reference = ReferenceModelConfig(
name="edc_action_item.CrfLongitudinalOne",
fields=["f1", "f2", "f3"])
site_reference_configs.register(reference)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(
visit_models={
"edc_appointment.appointment": "edc_metadata.subjectvisit"
})
subject_consent = SubjectConsent.objects.create(
subject_identifier=subject_identifier,
consent_datetime=get_utcnow())
_, schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata.onschedule")
schedule.put_on_schedule(
subject_identifier=subject_consent.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime,
)
return subject_identifier
def setUp(self):
import_holidays()
register_to_site_reference_configs()
for name in ['one', 'two', 'three', 'four', 'five', 'six']:
Panel.objects.create(name=name)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': 'edc_metadata.subjectvisit'})
self.subject_identifier = '1111111'
self.assertEqual(CrfMetadata.objects.all().count(), 0)
self.assertEqual(RequisitionMetadata.objects.all().count(), 0)
subject_consent = SubjectConsent.objects.create(
subject_identifier=self.subject_identifier,
consent_datetime=get_utcnow())
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
'edc_metadata.onschedule')
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=subject_consent.consent_datetime)
self.appointment = Appointment.objects.get(
subject_identifier=self.subject_identifier,
visit_code=self.schedule.visits.first.code)
self.subject_visit = SubjectVisit.objects.create(
appointment=self.appointment,
subject_identifier=self.subject_identifier,
reason=SCHEDULED)
def setUp(self):
load_list_data(
list_data=list_data,
model_name="edc_visit_tracking.subjectvisitmissedreasons",
)
self.subject_identifier = "12345"
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier)
crfs = FormsCollection(
Crf(show_order=1, model="edc_metadata.crfone", required=True),
Crf(show_order=2, model="edc_metadata.crftwo", required=True),
Crf(show_order=3, model="edc_metadata.crfthree", required=True),
Crf(show_order=4, model="edc_metadata.crffour", required=True),
Crf(show_order=5, model="edc_metadata.crffive", required=True),
)
crfs_missed = FormsCollection(
Crf(
show_order=1,
model="edc_visit_tracking.subjectvisitmissed",
required=True,
), )
visit_schedule1 = VisitSchedule(
name="visit_schedule1",
offstudy_model="edc_visit_tracking.subjectoffstudy",
death_report_model="edc_visit_tracking.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule1 = Schedule(
name="schedule1",
onschedule_model="edc_visit_tracking.onscheduleone",
offschedule_model="edc_visit_tracking.offscheduleone",
consent_model="edc_visit_tracking.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visits = []
for index in range(0, 4):
visits.append(
Visit(
code=f"{index + 1}000",
title=f"Day {index + 1}",
timepoint=index,
rbase=relativedelta(days=index),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=[],
crfs=crfs,
crfs_missed=crfs_missed,
allow_unscheduled=True,
))
for visit in visits:
schedule1.add_visit(visit)
visit_schedule1.add_schedule(schedule1)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"edc_visit_tracking.subjectvisit"
})
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
import_holidays()
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
visit = Visit(
code="1000",
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
timepoint=1,
)
self.schedule.add_visit(visit)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_reference_configs.registry = {}
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
self.subject_identifier = self.subject_consent.subject_identifier
def setUp(self):
self.subject_identifier = "12345"
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
site_visit_schedules.register(visit_schedule=visit_schedule2)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"edc_visit_tracking.subjectvisit"
})
def setUp(self):
SubjectVisit.visit_sequence_cls = VisitSequence
self.subject_identifier = "12345"
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
site_visit_schedules.register(visit_schedule=visit_schedule2)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"edc_visit_tracking.subjectvisit"
})
self.helper.consent_and_put_on_schedule()
def setUp(self):
self.panel_one = Panel.objects.create(name=panel_one.name)
self.panel_two = Panel.objects.create(name=panel_two.name)
self.panel_three = Panel.objects.create(name=panel_three.name)
self.panel_four = Panel.objects.create(name=panel_four.name)
self.panel_five = Panel.objects.create(name=panel_five.name)
self.panel_six = Panel.objects.create(name=panel_six.name)
self.panel_seven = Panel.objects.create(name=panel_seven.name)
self.panel_eight = Panel.objects.create(name=panel_eight.name)
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"edc_metadata_rules.subjectvisit"
})
_, self.schedule = site_visit_schedules.get_by_onschedule_model(
"edc_metadata_rules.onschedule")
site_metadata_rules.registry = OrderedDict()
def setUp(self):
super().setUp()
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
import_holidays()
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
site_consents.registry = {}
site_consents.register(v1_consent)
def setUp(self):
self.subject_identifier = "12345"
site_consents.registry = {}
site_consents.register(v1_consent)
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier,
subject_consent_model_cls=SubjectConsent,
onschedule_model_name="visit_schedule_app.onschedule",
)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.helper.consent_and_put_on_schedule()
appointment = Appointment.objects.all()[0]
self.subject_visit = SubjectVisit.objects.create(
appointment=appointment,
report_datetime=get_utcnow(),
reason=SCHEDULED)
def setUp(self):
site_visit_schedules.loaded = False
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
self.subject_identifier = "1234"
site_consents.registry = {}
site_consents.register(v1_consent)
def register_configs():
site_reference_configs.registry = {}
site_reference_configs.loaded = False
site_reference_configs.register_from_visit_schedule(
visit_models={
"edc_appointment.appointment": "reference_app.subjectvisit"
})
reference_config = ReferenceModelConfig(
name="reference_app.testmodel",
fields=["field_str", "report_datetime"])
site_reference_configs.register(reference_config)
reference_config = ReferenceModelConfig(
name="reference_app.subjectrequisition.cd4", fields=["panel"])
site_reference_configs.register(reference_config)
reference_config = ReferenceModelConfig(
name="reference_app.subjectrequisition.vl", fields=["panel"])
site_reference_configs.register(reference_config)
reference_config = ReferenceModelConfig(
name="reference_app.subjectrequisition.wb", fields=["panel"])
site_reference_configs.register(reference_config)
configs = {
"reference_app.crfone": [
"field_str",
"field_date",
"field_datetime",
"field_int",
],
}
for reference_name, fields in configs.items():
site_reference_configs.add_fields_to_config(name=reference_name,
fields=fields)
from edc_reference import site_reference_configs
from edc_visit_schedule.site_visit_schedules import site_visit_schedules
site_reference_configs.register_from_visit_schedule(
site_visit_schedules=site_visit_schedules)
configs = {
'bcpp_clinic_subject.questionnaire': ['registration_type'],
'bcpp_clinic_subject.viralloadtracking': ['is_drawn']}
for model, fields in configs.items():
site_reference_configs.add_fields_to_config(model, fields)
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': ['flourish_caregiver.maternalvisit'],
'flourish_child.appointment': ['flourish_child.childvisit'],
})
configs = {
'flourish_caregiver.caregivergadanxietyscreening': ['anxiety_score'],
'flourish_caregiver.caregiverphqdeprscreening':
['depression_score', 'self_harm'],
'flourish_caregiver.caregiveredinburghdeprscreening':
['depression_score', 'self_harm'],
'flourish_caregiver.hivdisclosurestatusa': ['disclosed_status'],
'flourish_caregiver.hivdisclosurestatusb': ['disclosed_status'],
'flourish_caregiver.hivdisclosurestatusc': ['disclosed_status'],
'flourish_child.childsociodemographic': ['attend_school', 'working'],
'flourish_child.childphqdepressionscreening':
['depression_score', 'self_harm', 'self_harm_thoughts', 'suidice_attempt'],
'flourish_child.childgadanxietyscreening': ['anxiety_score'],
'flourish_caregiver.hivrapidtestcounseling': ['result_date'],
'flourish_child.birthdata': ['congenital_anomalities'],
}
for reference_name, fields in configs.items():
site_reference_configs.add_fields_to_config(name=reference_name,
fields=fields)
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(visit_models={
'edc_appointment.appointment': ['pre_flourish.preflourishcaregivervisit']
})
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(visit_models={
'trainee_subject.appointment': ['trainee_subject.subjectvisit']
})
configs = {
'trainee_subject.communityquestionnaire': [
'community_activities', 'election', 'problems', 'problems_other',
'collaboration'
],
'trainee_subject.educationquestionnaire':
['work_status', 'work_type', 'recent_job', 'previous_earning'],
}
for reference_name, fields in configs.items():
site_reference_configs.add_fields_to_config(name=reference_name,
fields=fields)
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': ['td_maternal.maternalvisit'],
'td_infant.appointment': ['td_infant.infantvisit']})
configs = {
'td_maternal.maternalrando': ['rx'],
'td_maternal.maternalultrasoundinitial': ['number_of_gestations', 'edd_confirmed'],
'td_maternal.maternalcontraception': ['srh_referral'],
'td_maternal.rapidtestresult': ['result_date'],
'td_maternal.maternalpostpartumdep': ['laugh'],
'td_maternal.cliniciannotes': ['consent_model'],
'td_infant.infantcliniciannotes': ['consent_model'],
'td_infant.infantnvpdispensing': ['nvp_prophylaxis'],
'td_infant.infantarvproph': ['arv_status'],
'td_infant.infantfu': ['has_dx', 'physical_assessment'],
'td_infant.infantfeeding': ['formula_intro_occur'],
'td_infant.infantbirthdata': ['congenital_anomalities'],
'td_infant.karabotuberculosishistory': ['put_offstudy']
}
for reference_name, fields in configs.items():
site_reference_configs.add_fields_to_config(
name=reference_name, fields=fields)
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(
visit_models={"edc_appointment.appointment": "inte_subject.subjectvisit"})
# configs = {
# "inte_subject.education": ["household_head"],
# "inte_subject.patienthistory": ["cd4_date", "viral_load_date"],
# "inte_subject.medicalexpenses": ["care_before_hospital"],
# "inte_subject.week16": ["patient_alive"],
# }
#
# for reference_name, fields in configs.items():
# site_reference_configs.add_fields_to_config(
# name=reference_name, fields=fields)
from edc_reference import site_reference_configs
site_reference_configs.register_from_visit_schedule(
visit_models={
'edc_appointment.appointment': 'ambition_subject.subjectvisit'
})
configs = {
'ambition_subject.education': ['household_head'],
'ambition_subject.patienthistory': ['cd4_date', 'viral_load_date'],
'ambition_subject.medicalexpenses': ['care_before_hospital'],
'ambition_subject.week16': ['patient_alive'],
}
for reference_name, fields in configs.items():
site_reference_configs.add_fields_to_config(name=reference_name,
fields=fields)
