def test_normalize_seq_ids(self): tax = Taxonomy(tax_map=self.taxonomy.seq_ranks_map) self.assertTrue("UnpC[Ceti]" in tax.seq_ranks_map) self.assertTrue("UnpSomer," in tax.seq_ranks_map) tax.normalize_seq_ids() self.assertFalse("UnpC[Ceti]" in tax.seq_ranks_map) self.assertTrue("UnpC_Ceti_" in tax.seq_ranks_map) self.assertFalse("UnpSomer," in tax.seq_ranks_map) self.assertTrue("UnpSomer_" in tax.seq_ranks_map)
def test_normalize_seq_ids(self): tax = Taxonomy(tax_map=self.taxonomy.seq_ranks_map) self.assertTrue("UnpC[Ceti]" in tax.seq_ranks_map) self.assertTrue("UnpSomer," in tax.seq_ranks_map) tax.normalize_seq_ids() self.assertFalse("UnpC[Ceti]" in tax.seq_ranks_map) self.assertTrue("UnpC_Ceti_" in tax.seq_ranks_map) self.assertFalse("UnpSomer," in tax.seq_ranks_map) self.assertTrue("UnpSomer_" in tax.seq_ranks_map)