Exemplos de Taxonomy.normalize_seq_ids em Python

Exemplo n.º 1

Arquivo: test_taxonomy.py Projeto: anukat2015/sativa

 def test_normalize_seq_ids(self):
     tax = Taxonomy(tax_map=self.taxonomy.seq_ranks_map)
     self.assertTrue("UnpC[Ceti]" in tax.seq_ranks_map)
     self.assertTrue("UnpSomer," in tax.seq_ranks_map)
     tax.normalize_seq_ids()
     self.assertFalse("UnpC[Ceti]" in tax.seq_ranks_map)
     self.assertTrue("UnpC_Ceti_" in tax.seq_ranks_map)
     self.assertFalse("UnpSomer," in tax.seq_ranks_map)
     self.assertTrue("UnpSomer_" in tax.seq_ranks_map)

Exemplo n.º 2

Arquivo: test_taxonomy.py Projeto: pbordron/sativa

 def test_normalize_seq_ids(self):
     tax = Taxonomy(tax_map=self.taxonomy.seq_ranks_map)
     self.assertTrue("UnpC[Ceti]" in tax.seq_ranks_map)
     self.assertTrue("UnpSomer," in tax.seq_ranks_map)
     tax.normalize_seq_ids()
     self.assertFalse("UnpC[Ceti]" in tax.seq_ranks_map)
     self.assertTrue("UnpC_Ceti_" in tax.seq_ranks_map)
     self.assertFalse("UnpSomer," in tax.seq_ranks_map)
     self.assertTrue("UnpSomer_" in tax.seq_ranks_map)