def example():
''' Create images of a situation where the size of the place cell matters. '''
PlaceN = 500
GridN = 1000
C=.3
thresh = .0075
f_I = 5.31
f_p = 15
W = 1
min_grid_size = .0004
min_plcfld_size = .005
grid_net = GridNetwork(GridN, min_grid_size, W,W, None)
plc_net = PlaceNetwork(PlaceN, grid_net, wt_type='Monaco', C=C)
acts = plc_net.activity()
final_acts, _ = asymptotic_inhib(acts, f_I, f_p, thresh)
mesh_pts = acts[0].shape[0]
for i in range(PlaceN):
flds = PlaceField.above_cutoff(final_acts[i], use_cutoff=False)
num_flds, layout, _ = PlaceField.check_size(flds,W,W,min_plcfld_size,mesh_pts)
no_min, _, _ = PlaceField.check_size(flds,W,W,0,mesh_pts)
if no_min != num_flds:
# TODO(joelshor): Make plots twin aka. side by side.
_plot(grid_net.X[0],grid_net.Y[0],flds,'Before size check')
_plot(grid_net.X[0],grid_net.Y[0],layout,'After size check')
plt.show()
def example():
''' Create images of grid cell activity for the paper.
Called as python MakeFig.py grid
'''
W = 4
for min_grid_size in [.01,.007,.005,.003,.001,.0001]:
grid_net = GridNetwork(1,min_grid_size,W,W)
xx = grid_net.X[0]
yy = grid_net.Y[0]
act = grid_net.activity()[0]
_plot(xx,yy,act,None)
plt.show()
def example():
''' Create images of place cell output for the paper.
Called as python MakeFig.py inhib'''
thresh = .1
f_I = 7
f_p = 15
W = 1
C=.33
min_grid_size = .0004
grid_net = GridNetwork(1000,min_grid_size,W,W)
plc_net = PlaceNetwork(500,grid_net,wt_type='Monaco updated',C=C)
act = plc_net.activity()
final_acts, _ = asymptotic_inhib(act,f_I,f_p,thresh)
for i in range(5):
_plot(grid_net.X[0],grid_net.Y[0],final_acts[i],None)
plt.show()