Ejemplo n.º 1
0
    def __init__(self, parent=None):

        super().__init__(parent) 
        self.files = files.get_files()
        self.height = 300
        self.checkboxes = []
        self.col_selects = []
        self.initUI()
Ejemplo n.º 2
0
def test_get_files(size):
    with TemporaryDirectory(dir=TMP) as dirname:
        test_size_in_kb = size * ONE_KB
        _create_files(dirname)

        files = list(get_files(dirname, test_size_in_kb))
        filenames = [os.path.splitext(os.path.basename(f))[0] for f in files]

        assert all(int(fn) >= test_size_in_kb for fn in filenames)
Ejemplo n.º 3
0
def test_get_files(byte_sizes, size_in_kb, expected):
    with TemporaryDirectory(dir=TMP) as dirname:
        for size in byte_sizes:
            with open(os.path.join(dirname, str(size)), 'wb') as f:
                f.write(os.urandom(size))

        actual = [os.path.basename(fi) for fi in
                  get_files(dirname, size_in_kb)]
        assert sorted(actual) == sorted(expected)
Ejemplo n.º 4
0
def select_data(in_path,out_path,prefix="bin"):
    files.make_dir(out_path)
    all_files=files.get_files(in_path)
    prefix_files=[f for f in all_files 
	                if files.extract_prefix(f)==prefix]
    in_prefix_files=files.append_path(in_path,prefix_files)
    out_prefix_files=files.append_path(out_path,prefix_files)
    for in_file,out_file in zip(in_prefix_files,out_prefix_files):
        shutil.copyfile(in_file, out_file)
        print(in_file)
Ejemplo n.º 5
0
def list_file():
    user = session['user']

    users = None
    if user.id == 1:
        users = auth.get_users_dict()

    fs = files.get_files([user.id] if user.id != 1 else None)
    folders = files.get_folders_dict()

    return render_template('files.html', files=fs, users=users, user=user, folders=folders)
Ejemplo n.º 6
0
def main():
    directory = "E:\Vidur\Analysis ongoing\FCS-arranged\Non RNAi"
    root = Tkinter.Tk()
    folder = tkFileDialog.askdirectory(initialdir = directory,parent=root,title='Choose a folder')
    root.withdraw()
    
    row_count = 1
    fileiter = 0
    file_list = files.get_files(folder, only=[".dat", "100", "tet","ALM"], skip=["codes",".png","away","branch","end"])
    start_time_final = time.time()
    
    for datafile in file_list:
        start_time = time.time()
        fileiter = process(row_count, fileiter, datafile, file_list)
        print("--- %s seconds ---" % (time.time() - start_time))
    print("--- %s seconds to complete---" % (time.time() - start_time_final))
Ejemplo n.º 7
0
def gather_data(directory):
    """ Gathers evaluation data from all csv files in a given
    directory.

    Arguments:
        directory       Directory the csv files are stored in
    """

    # Get all the csv files
    data = []
    paths = files.get_files(directory, ['csv'])

    # Open each csv and dum all the responses to a list
    for p in paths:
        with open(p, 'r') as f:
            reader = csv.reader(f)
            data.extend(list(map(tuple, reader))[1:])
    
    return data
Ejemplo n.º 8
0
def search_files():
    query = request.args.get('q', None)
    if query is None:
        return redirect(request.referrer)

    user = None
    group_view = False

    if 'user' in session:

        is_own_file = request.args.get('is_own_file', '1') == '1'
        user = session['user']

        users = None
        if user.id == 1:
            # shared files are not enabled for superuser
            if is_own_file is False:
                abort(404)

            users = auth.get_users_dict()

        folders = None
        if is_own_file is False:
            users = auth.get_users_dict()
        elif user.id != 1:
            folders = files.get_folders_dict()

        fs = files.get_files([user.id] if user.id != 1 else None) if is_own_file else files.get_user_shared_files(user.id)


    # group view
    else:

        group = session['group']
        group_view = True

        fs = files.get_files_by_group(group.id)
        folders = files.get_folders_dict()
        users = auth.get_users_in_the_group(group.id)
        users = dict([[user.id, user] for user in users])

    fs = [ f for f in fs if f.name.find(query) >= 0 ]
    return render_template('files.html', files=fs, users=users, user=user, folders=folders, group_view=group_view, search_view=True, query=query)
Ejemplo n.º 9
0
    for i, ext in enumerate(exts):
        if ext[0] != '.':
            exts[i] = '.' + ext

    try:
        folders = [Path(folder) for folder in folders]
        is_folder = [folder.is_dir() for folder in folders]
        assert all(is_folder)
    except AssertionError:
        print('Invalid folder. Folder doesn\'t exist.')
    else:
        if not Path(folder_to_save).is_dir():
            os.mkdir(folder_to_save)

        files_list = get_files('.', folders=folders, exts=exts)

        list_files_2('.', folders=folders, exts=exts)

        if exts:
            if mode == '-c':
                for file in files_list:
                    shutil.copy(str(file),
                                Path('.') / folder_to_save / file.name)
            elif mode == '-m':
                for file in files_list:
                    shutil.move(str(file),
                                Path('.') / folder_to_save / file.name)
        else:
            if mode == '-c':
                for folder in folders: