def __init__(self, parent=None):
super().__init__(parent)
self.files = files.get_files()
self.height = 300
self.checkboxes = []
self.col_selects = []
self.initUI()
def test_get_files(size):
with TemporaryDirectory(dir=TMP) as dirname:
test_size_in_kb = size * ONE_KB
_create_files(dirname)
files = list(get_files(dirname, test_size_in_kb))
filenames = [os.path.splitext(os.path.basename(f))[0] for f in files]
assert all(int(fn) >= test_size_in_kb for fn in filenames)
def test_get_files(byte_sizes, size_in_kb, expected):
with TemporaryDirectory(dir=TMP) as dirname:
for size in byte_sizes:
with open(os.path.join(dirname, str(size)), 'wb') as f:
f.write(os.urandom(size))
actual = [os.path.basename(fi) for fi in
get_files(dirname, size_in_kb)]
assert sorted(actual) == sorted(expected)
def select_data(in_path,out_path,prefix="bin"):
files.make_dir(out_path)
all_files=files.get_files(in_path)
prefix_files=[f for f in all_files
if files.extract_prefix(f)==prefix]
in_prefix_files=files.append_path(in_path,prefix_files)
out_prefix_files=files.append_path(out_path,prefix_files)
for in_file,out_file in zip(in_prefix_files,out_prefix_files):
shutil.copyfile(in_file, out_file)
print(in_file)
def list_file():
user = session['user']
users = None
if user.id == 1:
users = auth.get_users_dict()
fs = files.get_files([user.id] if user.id != 1 else None)
folders = files.get_folders_dict()
return render_template('files.html', files=fs, users=users, user=user, folders=folders)
def main():
directory = "E:\Vidur\Analysis ongoing\FCS-arranged\Non RNAi"
root = Tkinter.Tk()
folder = tkFileDialog.askdirectory(initialdir = directory,parent=root,title='Choose a folder')
root.withdraw()
row_count = 1
fileiter = 0
file_list = files.get_files(folder, only=[".dat", "100", "tet","ALM"], skip=["codes",".png","away","branch","end"])
start_time_final = time.time()
for datafile in file_list:
start_time = time.time()
fileiter = process(row_count, fileiter, datafile, file_list)
print("--- %s seconds ---" % (time.time() - start_time))
print("--- %s seconds to complete---" % (time.time() - start_time_final))
def gather_data(directory):
""" Gathers evaluation data from all csv files in a given
directory.
Arguments:
directory Directory the csv files are stored in
"""
# Get all the csv files
data = []
paths = files.get_files(directory, ['csv'])
# Open each csv and dum all the responses to a list
for p in paths:
with open(p, 'r') as f:
reader = csv.reader(f)
data.extend(list(map(tuple, reader))[1:])
return data
def search_files():
query = request.args.get('q', None)
if query is None:
return redirect(request.referrer)
user = None
group_view = False
if 'user' in session:
is_own_file = request.args.get('is_own_file', '1') == '1'
user = session['user']
users = None
if user.id == 1:
# shared files are not enabled for superuser
if is_own_file is False:
abort(404)
users = auth.get_users_dict()
folders = None
if is_own_file is False:
users = auth.get_users_dict()
elif user.id != 1:
folders = files.get_folders_dict()
fs = files.get_files([user.id] if user.id != 1 else None) if is_own_file else files.get_user_shared_files(user.id)
# group view
else:
group = session['group']
group_view = True
fs = files.get_files_by_group(group.id)
folders = files.get_folders_dict()
users = auth.get_users_in_the_group(group.id)
users = dict([[user.id, user] for user in users])
fs = [ f for f in fs if f.name.find(query) >= 0 ]
return render_template('files.html', files=fs, users=users, user=user, folders=folders, group_view=group_view, search_view=True, query=query)
for i, ext in enumerate(exts):
if ext[0] != '.':
exts[i] = '.' + ext
try:
folders = [Path(folder) for folder in folders]
is_folder = [folder.is_dir() for folder in folders]
assert all(is_folder)
except AssertionError:
print('Invalid folder. Folder doesn\'t exist.')
else:
if not Path(folder_to_save).is_dir():
os.mkdir(folder_to_save)
files_list = get_files('.', folders=folders, exts=exts)
list_files_2('.', folders=folders, exts=exts)
if exts:
if mode == '-c':
for file in files_list:
shutil.copy(str(file),
Path('.') / folder_to_save / file.name)
elif mode == '-m':
for file in files_list:
shutil.move(str(file),
Path('.') / folder_to_save / file.name)
else:
if mode == '-c':
for folder in folders:
