def index():
"""
"""
paths = None
print('Request - 202 - Analysis beginning')
if request.method == 'POST':
data = list(request.form.keys())[0]
data = ast.literal_eval(data)
email: str = data['email']
accession: str = data['accession'] if 'accession' in data else ''
protein: str = data['protein'] if 'protein' in data else ''
sequence: str = data['sequence'] if 'sequence' in data else ''
similarity: int = data['similarity'] if 'similarity' in data else ''
basepairs: int = data['basepairs'] if 'basepairs' in data else ''
# expect: int = data['evalue'] if 'evalue' in data else 10
print('Launching finder ... ')
# send_email(email, data['uuid4'])
finder = None
if sequence:
if similarity and basepairs:
finder = Finder(email=email,
seq=sequence,
similarity=float(similarity) / 100,
bp=int(basepairs))
elif similarity and not basepairs:
finder = Finder(email=email,
seq=sequence,
similarity=float(similarity) / 100)
elif not similarity and basepairs:
finder = Finder(email=email, seq=sequence, bp=int(basepairs))
else:
finder = Finder(email=email, seq=sequence)
else:
print(similarity, basepairs)
if similarity and basepairs:
finder = Finder(email=email,
accession=accession,
coreGene=protein,
similarity=float(similarity) / 100,
bp=int(basepairs)) #noqa
elif similarity and not basepairs:
finder = Finder(email=email,
accession=accession,
coreGene=protein,
similarity=float(similarity) / 100) #noqa
elif not similarity and basepairs:
finder = Finder(email=email,
accession=accession,
coreGene=protein,
bp=int(basepairs))
else:
finder = Finder(email=email,
accession=accession,
coreGene=protein)
# finder = Finder(email, accession=accession, coreGene=protein, similarity=float(similarity), bp=int(basepairs))
paths = finder.finder()
print('Finder completed ... ')
if paths:
print('Insert into DB')
insert_job_number(data['uuid4'])
insert_job_data(data['uuid4'], paths)
else:
print('empty')
return jsonify('AMI Motivated')
