Ejemplos de write_genepred_to_fasta en Python

Ejemplo n.º 1

def main():

  if len(sys.argv) != 4:
    print sys.argv[0] + ' <genepred> <genome fasta> <output fasta>'
    sys.exit()
  genepred_filename = sys.argv[1]
  genome_filename = sys.argv[2]
  output_filename = sys.argv[3]
  genepred_basics.write_genepred_to_fasta(genepred_filename,genome_filename,output_filename)

Ejemplo n.º 2

Archivo: genepred_to_fasta.py Proyecto: jason-weirather/Au-public

def main():

  if len(sys.argv) < 4:
    print sys.argv[0] + " <genepred> <genome fasta> <output fasta> <(optional) 'directionless' for no RC>"
    sys.exit()
  genepred_filename = sys.argv[1]
  genome_filename = sys.argv[2]
  output_filename = sys.argv[3]
  dodirectionless = 0
  if len(sys.argv) == 5:
    dodirectionless = 1
  if dodirectionless == 1:
    genepred_basics.write_genepred_to_fasta_directionless(genepred_filename,genome_filename,output_filename)
  else:
    genepred_basics.write_genepred_to_fasta(genepred_filename,genome_filename,output_filename)

Ejemplo n.º 3

Archivo: genepred_to_fasta.py Proyecto: songjiajia2018/Manual-for-running-IDP-pipeline

def main():

    if len(sys.argv) < 4:
        print sys.argv[
            0] + " <genepred> <genome fasta> <output fasta> <(optional) 'directionless' for no RC>"
        sys.exit()
    genepred_filename = sys.argv[1]
    genome_filename = sys.argv[2]
    output_filename = sys.argv[3]
    dodirectionless = 0
    if len(sys.argv) == 5:
        dodirectionless = 1
    if dodirectionless == 1:
        genepred_basics.write_genepred_to_fasta_directionless(
            genepred_filename, genome_filename, output_filename)
    else:
        genepred_basics.write_genepred_to_fasta(genepred_filename,
                                                genome_filename,
                                                output_filename)