def main(): if len(sys.argv) != 4: print sys.argv[0] + ' <genepred> <genome fasta> <output fasta>' sys.exit() genepred_filename = sys.argv[1] genome_filename = sys.argv[2] output_filename = sys.argv[3] genepred_basics.write_genepred_to_fasta(genepred_filename,genome_filename,output_filename)
def main(): if len(sys.argv) < 4: print sys.argv[0] + " <genepred> <genome fasta> <output fasta> <(optional) 'directionless' for no RC>" sys.exit() genepred_filename = sys.argv[1] genome_filename = sys.argv[2] output_filename = sys.argv[3] dodirectionless = 0 if len(sys.argv) == 5: dodirectionless = 1 if dodirectionless == 1: genepred_basics.write_genepred_to_fasta_directionless(genepred_filename,genome_filename,output_filename) else: genepred_basics.write_genepred_to_fasta(genepred_filename,genome_filename,output_filename)
def main(): if len(sys.argv) < 4: print sys.argv[ 0] + " <genepred> <genome fasta> <output fasta> <(optional) 'directionless' for no RC>" sys.exit() genepred_filename = sys.argv[1] genome_filename = sys.argv[2] output_filename = sys.argv[3] dodirectionless = 0 if len(sys.argv) == 5: dodirectionless = 1 if dodirectionless == 1: genepred_basics.write_genepred_to_fasta_directionless( genepred_filename, genome_filename, output_filename) else: genepred_basics.write_genepred_to_fasta(genepred_filename, genome_filename, output_filename)