tool_data_path=install_and_test_base_util.
additional_tool_data_path,
shed_tool_data_table_config=None,
persist=False)
now = time.strftime("%Y-%m-%d %H:%M:%S")
print "####################################################################################"
print "# %s - installation script for repositories of type tool_dependency_definition started." % now
if not can_update_tool_shed:
print "# This run will not update the Tool Shed database."
print "####################################################################################"
install_and_test_statistics_dict, error_message = install_and_test_repositories(
app, galaxy_shed_tools_dict_file, galaxy_shed_tool_conf_file,
galaxy_shed_tool_path)
try:
install_and_test_base_util.print_install_and_test_results(
'tool dependency definitions', install_and_test_statistics_dict,
error_message)
except Exception, e:
log.exception( 'Attempting to print the following dictionary...\n\n%s\n\n...threw the following exception...\n\n%s\n\n' % \
( str( install_and_test_statistics_dict ), str( e ) ) )
log.debug("Shutting down...")
# Gracefully shut down the embedded web server and UniverseApplication.
if server:
log.debug("Shutting down embedded galaxy web server...")
server.server_close()
server = None
log.debug("Embedded galaxy server stopped...")
if app:
log.debug("Shutting down galaxy application...")
app.shutdown()
app = None
tool_data_path=install_and_test_base_util.additional_tool_data_path,
shed_tool_data_table_config=None,
persist=False )
now = time.strftime( "%Y-%m-%d %H:%M:%S" )
print "####################################################################################"
print "# %s - installation script for repositories of type tool_dependency_definition started." % now
if not can_update_tool_shed:
print "# This run will not update the Tool Shed database."
print "####################################################################################"
install_and_test_statistics_dict, error_message = install_and_test_repositories( app,
galaxy_shed_tools_dict_file,
galaxy_shed_tool_conf_file,
galaxy_shed_tool_path )
try:
install_and_test_base_util.print_install_and_test_results( 'tool dependency definitions',
install_and_test_statistics_dict,
error_message )
except Exception, e:
log.exception( 'Attempting to print the following dictionary...\n\n%s\n\n...threw the following exception...\n\n%s\n\n' % \
( str( install_and_test_statistics_dict ), str( e ) ) )
log.debug( "Shutting down..." )
# Gracefully shut down the embedded web server and UniverseApplication.
if server:
log.debug( "Shutting down embedded galaxy web server..." )
server.server_close()
server = None
log.debug( "Embedded galaxy server stopped..." )
if app:
log.debug( "Shutting down galaxy application..." )
app.shutdown()
app = None
