tool_data_path=install_and_test_base_util. additional_tool_data_path, shed_tool_data_table_config=None, persist=False) now = time.strftime("%Y-%m-%d %H:%M:%S") print "####################################################################################" print "# %s - installation script for repositories of type tool_dependency_definition started." % now if not can_update_tool_shed: print "# This run will not update the Tool Shed database." print "####################################################################################" install_and_test_statistics_dict, error_message = install_and_test_repositories( app, galaxy_shed_tools_dict_file, galaxy_shed_tool_conf_file, galaxy_shed_tool_path) try: install_and_test_base_util.print_install_and_test_results( 'tool dependency definitions', install_and_test_statistics_dict, error_message) except Exception, e: log.exception( 'Attempting to print the following dictionary...\n\n%s\n\n...threw the following exception...\n\n%s\n\n' % \ ( str( install_and_test_statistics_dict ), str( e ) ) ) log.debug("Shutting down...") # Gracefully shut down the embedded web server and UniverseApplication. if server: log.debug("Shutting down embedded galaxy web server...") server.server_close() server = None log.debug("Embedded galaxy server stopped...") if app: log.debug("Shutting down galaxy application...") app.shutdown() app = None
tool_data_path=install_and_test_base_util.additional_tool_data_path, shed_tool_data_table_config=None, persist=False ) now = time.strftime( "%Y-%m-%d %H:%M:%S" ) print "####################################################################################" print "# %s - installation script for repositories of type tool_dependency_definition started." % now if not can_update_tool_shed: print "# This run will not update the Tool Shed database." print "####################################################################################" install_and_test_statistics_dict, error_message = install_and_test_repositories( app, galaxy_shed_tools_dict_file, galaxy_shed_tool_conf_file, galaxy_shed_tool_path ) try: install_and_test_base_util.print_install_and_test_results( 'tool dependency definitions', install_and_test_statistics_dict, error_message ) except Exception, e: log.exception( 'Attempting to print the following dictionary...\n\n%s\n\n...threw the following exception...\n\n%s\n\n' % \ ( str( install_and_test_statistics_dict ), str( e ) ) ) log.debug( "Shutting down..." ) # Gracefully shut down the embedded web server and UniverseApplication. if server: log.debug( "Shutting down embedded galaxy web server..." ) server.server_close() server = None log.debug( "Embedded galaxy server stopped..." ) if app: log.debug( "Shutting down galaxy application..." ) app.shutdown() app = None