def load_image_with_annots(self, image_id=None, rng=None):
""" Returns a random image and its annotations """
if image_id is not None and self.seed is not None:
rng = kwarray.ensure_rng(self.seed * len(self) + image_id)
rng = kwarray.ensure_rng(rng)
img, anns = demodata_toy_img(gsize=self._full_imgsize,
categories=self.catpats,
gray=self.gray,
rng=rng, n_annots=(0, 10))
_node_to_id = self.catgraph.node_to_id
img['id'] = int(rng.rand() * self._n_images)
img['file_name'] = '{}.png'.format(img['id'])
for ann in anns:
ann['category_id'] = _node_to_id[ann['category_name']]
return img, anns
def get_positive(self, index=None, rng=None):
"""
Get localization information for a positive region
Args:
index (int or None): indexes into the current positive pool
or if None returns a random negative
rng (RandomState): used only if index is None
Returns:
Dict: tr: target info dictionary
Example:
>>> from ndsampler import coco_sampler
>>> rng = kwarray.ensure_rng(0)
>>> self = coco_sampler.CocoSampler.demo().regions
>>> tr = self.get_positive(0, rng=rng)
>>> print(ub.repr2(tr, precision=2))
"""
if index is None:
rng = kwarray.ensure_rng(rng)
index = rng.randint(0, self.n_positives)
if self._pos_select_idxs is not None:
index = self._pos_select_idxs[index]
tr = self.targets.iloc[index]
return tr
def __init__(self,
index_to_label,
batch_size=1,
num_batches='auto',
quantile=0.5,
shuffle=False,
rng=None):
import kwarray
rng = kwarray.ensure_rng(rng, api='python')
label_to_indices = kwarray.group_items(np.arange(len(index_to_label)),
index_to_label)
label_to_freq = ub.map_vals(len, label_to_indices)
label_to_subsampler = {
label: RingSampler(indices, shuffle=shuffle, rng=rng)
for label, indices in label_to_indices.items()
}
self.label_to_freq = label_to_freq
self.index_to_label = index_to_label
self.batch_size = batch_size
self.shuffle = shuffle
self.rng = rng
self.label_to_indices = label_to_indices
self.label_to_subsampler = label_to_subsampler
if num_batches == 'auto':
self.num_batches = self._auto_num_batches(quantile)
else:
self.num_batches = num_batches
self.labels = list(self.label_to_indices.keys())
def random(Coords, num=1, dim=2, rng=None, meta=None):
"""
Makes random coordinates; typically for testing purposes
"""
rng = kwarray.ensure_rng(rng)
self = Coords(data=rng.rand(num, dim), meta=meta)
return self
def random(cls, nesting=(2, 5), rng=None):
"""
CommandLine:
xdoctest -m ndsampler.delayed DelayedWarp.random
Example:
>>> from ndsampler.delayed import * # NOQA
>>> self = DelayedWarp.random(nesting=(4, 7))
>>> print('self = {!r}'.format(self))
>>> print(ub.repr2(self.nesting(), nl=-1, sort=0))
"""
from kwarray.distributions import DiscreteUniform, Uniform
rng = kwarray.ensure_rng(rng)
chan_distri = DiscreteUniform.coerce((1, 5), rng=rng)
nest_distri = DiscreteUniform.coerce(nesting, rng=rng)
size_distri = DiscreteUniform.coerce((8, 64), rng=rng)
raw_distri = Uniform(rng=rng)
leaf_c = chan_distri.sample()
leaf_w = size_distri.sample()
leaf_h = size_distri.sample()
raw = raw_distri.sample(leaf_h, leaf_w, leaf_c)
layer = raw
depth = nest_distri.sample()
for _ in range(depth):
tf = Affine.random(rng=rng).matrix
layer = DelayedWarp(layer, tf, dsize='auto')
self = layer
return self
def demo(cls, key='img', rng=None, **kwargs):
"""
Create data for tests
Example:
>>> from netharn.data.data_containers import * # NOQA
>>> print(ItemContainer.demo('img'))
>>> print(ItemContainer.demo('labels'))
>>> print(ItemContainer.demo('box'))
"""
import kwarray
rng = kwarray.ensure_rng(rng)
if key == 'img':
shape = kwargs.get('shape', (3, 512, 512))
data = rng.rand(*shape).astype(np.float32)
data = torch.from_numpy(data)
self = cls(data, stack=True)
elif key == 'labels':
n = rng.randint(0, 10)
data = rng.randint(0, 10, n)
data = torch.from_numpy(data)
self = cls(data, stack=False)
elif key == 'box':
n = rng.randint(0, 10)
data = rng.rand(n, 4)
data = torch.from_numpy(data)
self = cls(data, stack=False)
else:
raise KeyError(key)
return self
def image_variations(image_basis):
"""
Helper to make several variations of image inputs for opencv with different
dtypes etc..
"""
rng = kwarray.ensure_rng(0)
if image_basis is None:
image_basis = {
'dims': [(32, 32), (37, 41), (53, 31)],
'channels': [None, 1, 3, 4, 20, 1024],
'dtype': ['uint8', 'int64', 'float32', 'float64'],
}
# TODO: how to specify conditionals?
# conditionals = {
# np.uint8
# }
for imgkw in list(basis_product(image_basis)):
if imgkw['channels'] is None:
shape = imgkw['dims']
else:
shape = imgkw['dims'] + (imgkw['channels'], )
dtype = np.dtype(imgkw['dtype'])
img = rng.rand(*shape)
if dtype.kind in {'i', 'u'}:
img = img * 255
img = img.astype(dtype)
yield imgkw, img
def __init__(self, size=4, border=1, n=100, rng=None):
import kwarray
rng = kwarray.ensure_rng(rng)
h = w = size
whiteish = 1 - (np.abs(rng.randn(n, 1, h, w) / 4) % 1)
blackish = (np.abs(rng.randn(n, 1, h, w) / 4) % 1)
fw = border
slices = [slice(None, fw), slice(-fw, None)]
# class 0 is white block inside a black frame
data1 = whiteish.copy()
for sl1, sl2 in it.product(slices, slices):
data1[..., sl1, :] = blackish[..., sl1, :]
data1[..., :, sl2] = blackish[..., :, sl2]
# class 1 is black block inside a white frame
data2 = blackish.copy()
for sl1, sl2 in it.product(slices, slices):
data2[..., sl1, :] = whiteish[..., sl1, :]
data2[..., :, sl2] = whiteish[..., :, sl2]
self.data = np.concatenate([data1, data2], axis=0)
self.labels = np.array(([0] * n) + ([1] * n))
suffix = ub.hash_data([size, border, n, rng],
base='abc',
hasher='sha1')[0:16]
self.input_id = 'TD2D_{}_'.format(n) + suffix
def demo(cls, n=10, p_true=0.5, p_error=0.2, rng=None):
"""
Create random data for tests
Example:
>>> cfsn = BinaryConfusionVectors.demo(n=1000, p_error=0.1)
>>> print(cfsn.data._pandas())
>>> roc_info = cfsn.roc()
>>> pr_info = cfsn.precision_recall()
>>> print('roc_info = {!r}'.format(roc_info))
>>> print('pr_info = {!r}'.format(pr_info))
>>> # xdoctest: +REQUIRES(--show)
>>> import kwplot
>>> kwplot.autompl()
>>> kwplot.figure(fnum=1, pnum=(1, 2, 1))
>>> pr_info.draw()
>>> kwplot.figure(fnum=1, pnum=(1, 2, 2))
>>> roc_info.draw()
"""
import kwarray
rng = kwarray.ensure_rng(rng)
score = rng.rand(n)
data = kwarray.DataFrameArray({
'is_true': (score > p_true).astype(np.uint8),
'pred_score':
score,
})
flags = rng.rand(n) < p_error
data['is_true'][flags] = 1 - data['is_true'][flags]
classes = ['c1', 'c2', 'c3']
self = cls(data, cx=1, classes=classes)
return self
def _demo_probs(self, num=5, rng=0, nonrandom=3, hackargmax=True):
""" dummy probabilities for testing """
import torch
rng = kwarray.ensure_rng(rng)
class_energy = torch.FloatTensor(rng.rand(num, len(self)))
# Setup the first few examples to prefer being classified
# as a fine grained class to a decreasing degree.
# The first example is set to have equal energy
# The i + 2-th example is set to have an extremely high energy.
start = 0
nonrandom = min(nonrandom, (num - start))
if nonrandom > 0:
path = sorted(ub.take(self.node_to_idx, nx.dag_longest_path(self.graph)))
class_energy[start] = 1 / len(class_energy[start])
if hackargmax:
# HACK: even though we want to test uniform distributions, it makes
# regression tests difficiult because torch and numpy return a
# different argmax when the array has more than one max value.
# add a VERY small epsilon to make max values distinct
class_energy[start] += torch.linspace(0, .00001, len(class_energy[start]))
if nonrandom > 1:
for i in range(nonrandom - 2):
class_energy[start + i + 1][path] += 2 ** (i / 4)
class_energy[start + i + 2][path] += 2 ** 20
class_probs = self.hierarchical_softmax(class_energy, dim=1)
return class_probs
def _demo_item(self, dims=(4, 4), rng=None):
"""
Create an input that satisfies this spec
Returns:
dict: an item like it might appear when its returned from the
`__getitem__` method of a :class:`torch...Dataset`.
Example:
>>> dims = (1, 1)
>>> ChannelSpec.coerce(3)._demo_item(dims, rng=0)
>>> ChannelSpec.coerce('r|g|b|disaprity')._demo_item(dims, rng=0)
>>> ChannelSpec.coerce('rgb|disaprity')._demo_item(dims, rng=0)
>>> ChannelSpec.coerce('rgb,disaprity')._demo_item(dims, rng=0)
>>> ChannelSpec.coerce('rgb')._demo_item(dims, rng=0)
>>> ChannelSpec.coerce('gray')._demo_item(dims, rng=0)
"""
import torch
import kwarray
rng = kwarray.ensure_rng(rng)
item_shapes = self._item_shapes(dims)
item = {
key: torch.from_numpy(rng.rand(*shape))
for key, shape in item_shapes.items()
}
return item
def worker_init_fn(worker_id):
for i in range(worker_id + 1):
seed = np.random.randint(0, int(2**32) - 1)
seed = seed + worker_id
kwarray.seed_global(seed)
if self.augmenter:
rng = kwarray.ensure_rng(None)
self.augmenter.seed_(rng)
def load_negative(self, index=None, pad=None, window_dims=None, rng=None):
if index is not None and self.seed is not None:
rng = kwarray.ensure_rng(self.seed * len(self) + index)
sample = self._load_toy_sample(window_dims, pad, rng,
centerobj='neg',
n_annots=self._n_annots_neg)
return sample
def __init__(self, items, shuffle=False, rng=None):
import kwarray
if len(items) == 0:
raise Exception('no items to sample')
self.rng = kwarray.ensure_rng(rng)
self.items = np.array(items)
self.shuffle = shuffle
self.indices = np.arange(len(items))
self._pos = None
self.refresh()
def random_ordered_tree(n, seed=None, pool=None):
import kwarray
rng = kwarray.ensure_rng(seed, 'python')
tree = nx.dfs_tree(nx.random_tree(n, seed=seed))
otree = nx.OrderedDiGraph()
otree.add_edges_from(tree.edges)
if pool is not None:
for node in otree.nodes:
otree.nodes[node]['label'] = rng.choice(pool)
return otree
def random(cls, shape=None, rng=None):
import kwarray
rng = kwarray.ensure_rng(rng)
self = cls(None)
if isinstance(shape, int):
shape = (shape, shape)
if shape is None:
shape = self.shape
self.matrix = rng.rand(*shape)
return self
def worker_init_fn(worker_id, augmenter=None):
for i in range(worker_id + 1):
seed = np.random.randint(0, int(2**31) - 1)
seed = seed + worker_id
kwarray.seed_global(seed)
worker_info = torch.utils.data.get_worker_info()
self = worker_info.dataset
if self.augmenter:
rng = kwarray.ensure_rng(None)
self.augmenter.seed_(rng)
def test_class_torch():
import numpy as np
import torch
import ubelt as ub
import kwarray
import kwimage
thresh = .5
num = 500
rng = kwarray.ensure_rng(0)
cpu_boxes = kwimage.Boxes.random(num,
scale=400.0,
rng=rng,
format='tlbr',
tensor=True)
cpu_tlbr = cpu_boxes.to_tlbr().data
# cpu_scores = torch.Tensor(rng.rand(len(cpu_tlbr)))
# make all scores unique to ensure comparability
cpu_scores = torch.Tensor(np.linspace(0, 1, len(cpu_tlbr)))
cpu_cls = torch.LongTensor(rng.randint(0, 10, len(cpu_tlbr)))
tlbr = cpu_boxes.to_tlbr().data.to('cuda')
scores = cpu_scores.to('cuda')
classes = cpu_cls.to('cuda')
keep1 = []
for idxs in ub.group_items(range(len(classes)),
classes.cpu().numpy()).values():
# cls_tlbr = tlbr.take(idxs, axis=0)
# cls_scores = scores.take(idxs, axis=0)
cls_tlbr = tlbr[idxs]
cls_scores = scores[idxs]
cls_keep = torch_nms(cls_tlbr, cls_scores, thresh=thresh, bias=0)
keep1.extend(list(ub.compress(idxs, cls_keep.cpu().numpy())))
keep1 = sorted(keep1)
keep_ = torch_nms(tlbr, scores, classes=classes, thresh=thresh, bias=0)
keep2 = np.where(keep_.cpu().numpy())[0].tolist()
keep3 = kwimage.non_max_supression(tlbr.cpu().numpy(),
scores.cpu().numpy(),
classes=classes.cpu().numpy(),
thresh=thresh,
bias=0,
impl='gpu')
print(len(keep1))
print(len(keep2))
print(len(keep3))
print(set(keep1) - set(keep2))
print(set(keep2) - set(keep1))
def random(self, n=3, rng=None, tight=False):
"""
Create a random MultiPolygon
Returns:
MultiPolygon
"""
import kwarray
rng = kwarray.ensure_rng(rng)
data = [Polygon.random(rng=rng, tight=tight) for _ in range(n)]
self = MultiPolygon(data)
return self
def random(cls, size=None, min=None, max=None, rng=None):
min = np.iinfo(int).min if min is None else min
max = np.iinfo(int).max if max is None else max
rng = ensure_rng(rng)
if size is None:
n, d = map(int, rng.randint(min, max, size=2))
return cls(n, d)
else:
items = np.empty(size, dtype=Rational)
ns, ds = rng.randint(min, max, size=(2, items.size))
items.ravel()[:] = [
Rational(int(n), int(d)) for n, d in zip(ns, ds)
]
return items
def get_item(self, index, rng=None):
"""
Loads from positives and then negatives.
"""
if index is None:
rng = kwarray.ensure_rng(rng)
index = rng.randint(0, self.n_samples)
if index < self.n_positives:
sample = self.get_positive(index, rng=rng)
else:
index = index - self.n_positives
sample = self.get_negative(index, rng=rng)
return sample
def select_positive_regions(targets, window_dims=(300, 300), thresh=0.0,
rng=None, verbose=0):
"""
Reduce positive example redundency by selecting disparate positive samples
Example:
>>> from ndsampler.coco_regions import *
>>> import kwcoco
>>> dset = kwcoco.CocoDataset.demo('shapes8')
>>> targets = tabular_coco_targets(dset)
>>> window_dims = (300, 300)
>>> selected = select_positive_regions(targets, window_dims)
>>> print(len(selected))
>>> print(len(dset.anns))
"""
unique_gids, groupxs = kwarray.group_indices(targets['gid'])
gid_to_groupx = dict(zip(unique_gids, groupxs))
wh, ww = window_dims
rng = kwarray.ensure_rng(rng)
selection = []
# Get all the bounding boxes
cxs, cys = ub.take(targets, ['cx', 'cy'])
n = len(targets)
cxs = cxs.astype(np.float32)
cys = cys.astype(np.float32)
wws = np.full(n, ww, dtype=np.float32)
whs = np.full(n, wh, dtype=np.float32)
cxywh = np.hstack([a[:, None] for a in [cxs, cys, wws, whs]])
boxes = kwimage.Boxes(cxywh, 'cxywh').to_tlbr()
iter_ = ub.ProgIter(gid_to_groupx.items(),
enabled=verbose,
label='select positive regions',
total=len(gid_to_groupx), adjust=0, freq=32)
for gid, groupx in iter_:
# Select all candiate windows in this image
cand_windows = boxes.take(groupx, axis=0)
# Randomize which candidate windows have the highest scores so the
# selection can vary each epoch.
cand_scores = rng.rand(len(cand_windows))
cand_dets = kwimage.Detections(boxes=cand_windows, scores=cand_scores)
# Non-max supresssion is really similar to set-cover
keep = cand_dets.non_max_supression(thresh=thresh)
selection.extend(groupx[keep])
selection = np.array(sorted(selection))
return selection
def main(cls, cmdline=True, **kw):
"""
Example:
>>> kw = {'src': 'special:shapes8',
>>> 'dst1': 'train.json', 'dst2': 'test.json'}
>>> cmdline = False
>>> cls = CocoSplitCLI
>>> cls.main(cmdline, **kw)
"""
import kwcoco
import kwarray
from kwcoco.util import util_sklearn
config = cls.CLIConfig(kw, cmdline=cmdline)
print('config = {}'.format(ub.repr2(dict(config), nl=1)))
if config['src'] is None:
raise Exception('must specify source: {}'.format(config['src']))
print('reading fpath = {!r}'.format(config['src']))
dset = kwcoco.CocoDataset.coerce(config['src'])
annots = dset.annots()
gids = annots.gids
cids = annots.cids
# Balanced category split
rng = kwarray.ensure_rng(config['rng'])
shuffle = rng is not None
self = util_sklearn.StratifiedGroupKFold(n_splits=config['factor'],
random_state=rng,
shuffle=shuffle)
split_idxs = list(self.split(X=gids, y=cids, groups=gids))
idxs1, idxs2 = split_idxs[0]
gids1 = sorted(ub.unique(ub.take(gids, idxs1)))
gids2 = sorted(ub.unique(ub.take(gids, idxs2)))
dset1 = dset.subset(gids1)
dset2 = dset.subset(gids2)
dset1.fpath = config['dst1']
print('Writing dset1 = {!r}'.format(dset1.fpath))
dset1.dump(dset1.fpath, newlines=True)
dset2.fpath = config['dst2']
print('Writing dset2 = {!r}'.format(dset2.fpath))
dset2.dump(dset2.fpath, newlines=True)
def _stratified_split(gids, cids, n_splits=2, rng=None):
""" helper to split while trying to maintain class balance within images """
rng = kwarray.ensure_rng(rng)
from ndsampler.utils import util_sklearn
selector = util_sklearn.StratifiedGroupKFold(n_splits=n_splits,
random_state=rng,
shuffle=True)
# from sklearn import model_selection
# selector = model_selection.StratifiedKFold(
# n_splits=n_splits, random_state=rng, shuffle=True)
skf_list = list(selector.split(X=gids, y=cids, groups=gids))
trainx, testx = skf_list[0]
if 0:
_train_gids = set(ub.take(gids, trainx))
_test_gids = set(ub.take(gids, testx))
print('_train_gids = {!r}'.format(_train_gids))
print('_test_gids = {!r}'.format(_test_gids))
return trainx, testx
def random(cls, rng=None):
"""
Example:
>>> self = Segmentation.random()
>>> print('self = {!r}'.format(self))
>>> # xdoc: +REQUIRES(--show)
>>> import kwplot
>>> kwplot.autompl()
>>> kwplot.figure(fnum=1, doclf=True)
>>> self.draw()
>>> kwplot.show_if_requested()
"""
import kwarray
import kwimage
rng = kwarray.ensure_rng(rng)
if rng.rand() > 0.5:
data = kwimage.Polygon.random()
else:
data = kwimage.Mask.random()
return cls.coerce(data)
def __init__(self, num, dims=2, rng=None, **kwargs):
self.rng = kwarray.ensure_rng(rng)
self.num = num
self.dims = dims
# self.config = {
# 'perception_thresh': 0.08,
# 'max_speed': 0.005,
# 'max_force': 0.0003,
# }
self.config = {
'perception_thresh': 0.2,
'max_speed': 0.01,
'max_force': 0.001,
'damping': 0.99,
}
self.config.update(ub.dict_isect(kwargs, self.config))
self.pos = None
self.vel = None
self.acc = None
def random(cls, num_parts=3, rng=None):
"""
CommandLine:
xdoctest -m ndsampler.delayed DelayedWarp.random
Example:
>>> self = DelayedChannelConcat.random()
>>> print('self = {!r}'.format(self))
>>> print(ub.repr2(self.nesting(), nl=-1, sort=0))
"""
rng = kwarray.ensure_rng(rng)
self_w = rng.randint(8, 64)
self_h = rng.randint(8, 64)
components = []
for _ in range(num_parts):
subcomp = DelayedWarp.random(rng=rng)
tf = Affine.random(rng=rng).matrix
comp = subcomp.delayed_warp(tf, dsize=(self_w, self_h))
components.append(comp)
self = DelayedChannelConcat(components)
return self
def random(Points, num=1, classes=None, rng=None):
"""
Makes random points; typically for testing purposes
Example:
>>> import kwimage
>>> self = kwimage.Points.random(classes=[1, 2, 3])
>>> self.data
>>> print('self.data = {!r}'.format(self.data))
"""
rng = kwarray.ensure_rng(rng)
if ub.iterable(num):
shape = tuple(num) + (2,)
else:
shape = (num, 2)
self = Points(xy=rng.rand(*shape))
self.data['visible'] = np.full(len(self), fill_value=2)
if classes is not None:
class_idxs = (rng.rand(len(self)) * len(classes)).astype(np.int)
self.data['class_idxs'] = class_idxs
self.meta['classes'] = classes
return self
def _gen_cluttered_func(n=100):
lines = []
import ubelt as ub
import kwarray
rng = kwarray.ensure_rng(0)
varnames = []
for i in range(n):
mode = rng.choice(['int', 'float', 'str'])
if mode == 'int':
value = rng.randint(0, 100000)
if mode == 'str':
value = ub.hash_data(rng.randint(0, 100000))[0:10]
if mode == 'float':
value = rng.randn() * 1000
varname = 'var{:03d}'.format(i)
line = '{} = {!r}'.format(varname, value)
lines.append(line)
varnames.append(varname)
clutter_vars = ub.indent('\n'.join(lines))
template = ub.codeblock('''
def {FUNCNAME}():
{CLUTTER}
ignore_inf_loss_parts = d['ignore_inf_loss_parts']
for i in range(num_inner_loops):
if ignore_inf_loss_parts:
pass
# return {RETVAL}
''')
retval = '[{}]'.format(','.join(varnames))
funcname = 'clutter_{}'.format(n)
text = template.format(FUNCNAME=funcname,
CLUTTER=clutter_vars,
RETVAL=retval)
return text, funcname
def _make_intmask_demodata(rng=None):
"""
Creates demo data to test the script
"""
import kwarray
rng = kwarray.ensure_rng(rng) # seeded random number generator
dpath = ub.ensure_app_cache_dir('kwcoco/tests/masks')
shape = (128, 128)
num_masks = 10
def _random_multi_obj_mask(shape, rng):
"""
Create random int mask objects that can contain multiple objects.
Each object is a different positive integer
Ignore:
kwplot.imshow(kwimage.normalize(data))
kwplot.imshow(data)
"""
num_objects = rng.randint(0, 5)
data = np.zeros(shape, dtype=np.uint8)
for obj_idx in range(0, num_objects + 1):
# Make a binay mask and add it as a new objct
binmask = kwimage.Mask.random(shape=shape, rng=rng).data
data[binmask > 0] = obj_idx
return data
fpaths = [
join(dpath, 'mask_{:04d}.png'.format(mask_idx))
for mask_idx in range(num_masks)
]
for fpath in fpaths:
data = _random_multi_obj_mask(shape, rng=rng)
kwimage.imwrite(fpath, data)
return dpath
