#model_file_name = "chance_glycolysis_1960.xml"
#model_file_name = "repressilator_BIOMD12.xml"
model_file_name = "glycolysis_BIOMD176.xml"
model_file = Path(
pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
sl = SBMLlayout(str(model_file))
sl._describeModel()
sl.drawNetwork()
sl.aliasNode("ATP")
sl.aliasNode("ADP")
sl.drawNetwork()
sl.regenerateLayout()
sl.drawNetwork()
loo = sl.getLayoutAlgorithmOptions()
print(loo.k)
#sl.setLayoutAlgorithm_grav()
#sl.drawNetwork("glycolysis_bm12.png")
print("X1 locked, True: ", sl.getIsNodeLocked("X1"))
sl.regenerateLayout()
sl.drawNetwork()
sl.regenerateLayout()
sl.drawNetwork()
sl.unlockNode("X1")
print("X1 locked, False: ", sl.getIsNodeLocked("X1"))
print(sl.getReactionIds())
sl.aliasNode("A")
#print("A aliased? ", sl.getIsNodeAliased("A"))
sl.drawNetwork()
print(sl.getNodeIds())
print(sl.getReactionIds())
print(sl._describeModel())
x = list()
y = list()
for node in sl.getNodeIds():
centroid = sl.getNodeCentroid(node)
from libsbml_draw.model.sbml_layout import SBMLlayout
model_file_name = "BIOMD0000000013_url.xml"
# Poolman2004_CalvinCycle
sl = SBMLlayout(model_file_name, applyRender=False)
sl._describeModel()
#sl.drawNetwork("plant_metabolism.pdf")
sl.aliasNode("ATP_ch")
sl.aliasNode("ADP_ch")
sl.aliasNode("GAP_ch")
sl.aliasNode("PGA_ch")
sl.regenerateLayout()
sl.drawNetwork("plant_metabolism_alias.pdf")
from libsbml_draw.model.sbml_layout import SBMLlayout
model_file_name = "model.xml"
model_file = Path(
pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
applyRender = True
sl = SBMLlayout(str(model_file), applyRender=applyRender)
sl.lockNode("X0")
sl.lockNode("A")
sl.aliasNode("B")
sl.setNodeColor("B_1", "#00ff0030")
sl.setNodeColor("A", "#00ff0030")
sl.lockNode("B_1")
sl.lockNode("D")
sl.unlockNode("X0")
sl.unlockNode("A")
def test_node_locking():
assert sl.getIsNodeLocked("D") == True
assert sl.getIsNodeLocked("B_1") == True
assert sl.getIsNodeLocked("X0") == False
assert sl.getIsNodeLocked("A") == False