model_file_name = "simple-L2-render-local.xml"
#model_file_name = "simple-L2-render-local-L3V1.xml"
model_file = Path(
pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
sl = SBMLlayout(str(model_file))
sl._describeModel()
sl.drawNetwork()
sl.setCompartmentEdgeColor("vol1", "#0000ff")
sl.setCompartmentFillColor("vol1", "#ff000010")
sl.setCompartmentLineWidth("vol1", 5)
assert sl.getCompartmentEdgeColor("vol1") == "#0000ffff"
assert sl.getCompartmentFillColor("vol1") == "#ff000010"
assert sl.getCompartmentLineWidth("vol1") == 5
sl.drawNetwork("simple_render_local.png")
sl.writeSBMLFile("simple_render_local_out.xml")
slr = SBMLlayout("simple_render_local_out.xml")
slr.drawNetwork()
model_file_name = "simple-L2-render-global.xml"
#model_file_name = "simple-L2-render-global-L3V1.xml"
SBO term unexpected warning. Where does it come from
Gradient colours are cool. Would like to see them.
Font size should scale with scaling factor
'''
layout = SBMLlayout('Kholodenko2000.xml')
# print(layout.getNumberOfRoles())
layout.regenerateLayout()
[layout.setCompartmentEdgeColor(i, 'grey') for i in layout.getCompartmentIds()]
[layout.setNodeEdgeWidth(i, 10) for i in layout.getNodeIds()]
[layout.setNodeFontSize(i, 40) for i in layout.getNodeIds()]
[layout.setCompartmentLineWidth(i, 25) for i in layout.getCompartmentIds()]
# [layout.setReactionEdgeColor(i, edge_color='black') for i in layout.getReactionIds()]
[layout.setReactionCurveWidth(i, 10) for i in layout.getReactionIds()]
[layout.setArrowheadScale(i, 50) for i in range(layout.getNumberOfRoles())]
# [layout.setNodeColor(i, 'white') for i in layout.getNodeIds()]
# [layout.setNodeEdgeColor(i, 'black') for i in layout.getNodeIds()]
layout.drawNetwork('Kholodenko2000Layout.png', scaling_factor=1.5)
# layout.regenerateLayout()
# layout.regenerateLayout()
# layout.regenerateLayout()
# layout.regenerateLayout()
# layout.regenerateLayout()
# layout.drawNetwork('compartment_network.png')
#
# layout.writeSBMLFile('2CompartmentModelWithLayout.xml')
