class _VolumeDataSerializer(_TypeSerializer): __string = _StringSerializer() __cell = _UnitCellSerializer() def __init__(self): pass def version(self): return 0 def name(self): return "VolumeData" def serialize(self, version, value, context): context.write_int(value._width) context.write_int(value._height) context.write_int(value._depth) context.write_float(value._mean) context.write_float(value._rmsd) context.write_int(value._type) context.write_using_serializer(_VolumeDataSerializer.__string, value._name) context.write_using_serializer(_VolumeDataSerializer.__cell, value._cell) context.write_float_array(value._data) def deserialize(self, version, context): raise NotImplementedError
def __init__(self, shallow=False): self.shallow = shallow self.array = _ArraySerializer() self.atom = _AtomSerializerID() self.bond = _BondSerializer() self.color = _ColorSerializer() self.string = _StringSerializer()
class _FileExport(_TypeSerializer): _String = _StringSerializer() def version(self): return 0 def name(self): return "ExportFile" def serialize(self, version, value, context): pass def deserialize(self, version, context): filename = context.read_using_serializer(_FileExport._String) data = context.read_byte_array() return (filename, data)
from nanome._internal._util._serializers import _TypeSerializer, _ArraySerializer, _StringSerializer from nanome._internal._macro._serialization import _MacroSerializer macro_serializer = _MacroSerializer() string_serializer = _StringSerializer() class _SaveMacro(_TypeSerializer): _macro_serializer = macro_serializer _string_serializer = string_serializer def __init__(self): pass def version(self): return 0 def name(self): return "SaveMacro" def serialize(self, version, value, context): context.write_using_serializer(self._macro_serializer, value[0]) context.write_bool(value[1]) context.write_using_serializer(self._string_serializer, value[2]) def deserialize(self, version, context): raise NotImplementedError class _DeleteMacro(_TypeSerializer): _macro_serializer = macro_serializer _string_serializer = string_serializer def __init__(self):
def __init__(self, shallow=False): self.shallow = shallow self.array_serializer = _ArraySerializer() self.array_serializer.set_type(_ResidueSerializer()) self.string = _StringSerializer()
def __init__(self): self.__string = _StringSerializer()
def __init__(self): self.__dictionary = _DictionarySerializer() self.__dictionary.set_types(_StringSerializer(), _ByteSerializer())
def __init__(self): self.color = _ColorSerializer() self.string = _StringSerializer() self.vector = _Vector3Serializer() self.array = _ArraySerializer() self.bool = _BoolSerializer()
def __init__(self): self.__string_array = _ArraySerializer() self.__string_array.set_type(_StringSerializer()) self.__file_data_array = _ArraySerializer() self.__file_data_array.set_type(_FileDataSerializer())
import os import traceback import zlib from nanome.util import Logs from nanome._internal._network._serialization import _ContextSerialization, _ContextDeserialization from nanome._internal._structure._serialization import _WorkspaceSerializer, _AtomSerializer from nanome._internal._util._serializers import _DictionarySerializer, _StringSerializer, _ByteSerializer, _TypeSerializer, _LongSerializer # This package uses undocumented network code, in order to reuse already available serialization code workspace_serializer = _WorkspaceSerializer() dictionary_serializer = _DictionarySerializer() dictionary_serializer.set_types(_StringSerializer(), _ByteSerializer()) atom_dictionary_serializer = _DictionarySerializer() atom_dictionary_serializer.set_types(_LongSerializer(), _AtomSerializer()) def to_data(workspace): context = _ContextSerialization(0, _TypeSerializer.get_version_table()) context.write_uint(0) # Version context.write_using_serializer(dictionary_serializer, _TypeSerializer.get_version_table()) subcontext = context.create_sub_context() subcontext.payload["Atom"] = {} subcontext.write_using_serializer(workspace_serializer, workspace) context.write_using_serializer(atom_dictionary_serializer, subcontext.payload["Atom"]) context.write_bytes(subcontext.to_array())
def __init__(self): self.__complex = _ComplexSerializer() self.__string = _StringSerializer() self.__dict = _DictionarySerializer() self.__dict.set_types(_LongSerializer(), _AtomSerializer())
def __init__(self): self.__string = _StringSerializer() self.__directory_entry_array = _ArraySerializer() self.__directory_entry_array.set_type(_DirectoryEntrySerializer())
def __init__(self): self.string = _StringSerializer() self.items = _ArraySerializer() self.items.set_type(_DropdownItemSerializer())
def __init__(self, shallow=False): self.shallow = shallow self.array = _ArraySerializer() self.string = _StringSerializer() self.dictionary = _DictionarySerializer() self.dictionary.set_types(self.string, self.string)
def __init__(self): self.string = _StringSerializer() self.color = _ColorSerializer() self.vector = _Vector3Serializer()
def __init__(self): self.__tuple = _TupleSerializer(_IntSerializer(), _StringSerializer())
def __init__(self): self.data = _ArraySerializer() self.data.set_type(_ByteSerializer()) self.color = _ColorSerializer() self.string = _StringSerializer()
def __init__(self): self.__array = _ArraySerializer() self.__array.set_type(_StringSerializer())