class _VolumeDataSerializer(_TypeSerializer):
__string = _StringSerializer()
__cell = _UnitCellSerializer()
def __init__(self):
pass
def version(self):
return 0
def name(self):
return "VolumeData"
def serialize(self, version, value, context):
context.write_int(value._width)
context.write_int(value._height)
context.write_int(value._depth)
context.write_float(value._mean)
context.write_float(value._rmsd)
context.write_int(value._type)
context.write_using_serializer(_VolumeDataSerializer.__string,
value._name)
context.write_using_serializer(_VolumeDataSerializer.__cell,
value._cell)
context.write_float_array(value._data)
def deserialize(self, version, context):
raise NotImplementedError
def __init__(self, shallow=False):
self.shallow = shallow
self.array = _ArraySerializer()
self.atom = _AtomSerializerID()
self.bond = _BondSerializer()
self.color = _ColorSerializer()
self.string = _StringSerializer()
class _FileExport(_TypeSerializer):
_String = _StringSerializer()
def version(self):
return 0
def name(self):
return "ExportFile"
def serialize(self, version, value, context):
pass
def deserialize(self, version, context):
filename = context.read_using_serializer(_FileExport._String)
data = context.read_byte_array()
return (filename, data)
from nanome._internal._util._serializers import _TypeSerializer, _ArraySerializer, _StringSerializer
from nanome._internal._macro._serialization import _MacroSerializer
macro_serializer = _MacroSerializer()
string_serializer = _StringSerializer()
class _SaveMacro(_TypeSerializer):
_macro_serializer = macro_serializer
_string_serializer = string_serializer
def __init__(self):
pass
def version(self):
return 0
def name(self):
return "SaveMacro"
def serialize(self, version, value, context):
context.write_using_serializer(self._macro_serializer, value[0])
context.write_bool(value[1])
context.write_using_serializer(self._string_serializer, value[2])
def deserialize(self, version, context):
raise NotImplementedError
class _DeleteMacro(_TypeSerializer):
_macro_serializer = macro_serializer
_string_serializer = string_serializer
def __init__(self):
def __init__(self, shallow=False):
self.shallow = shallow
self.array_serializer = _ArraySerializer()
self.array_serializer.set_type(_ResidueSerializer())
self.string = _StringSerializer()
def __init__(self):
self.__string = _StringSerializer()
def __init__(self):
self.__dictionary = _DictionarySerializer()
self.__dictionary.set_types(_StringSerializer(), _ByteSerializer())
def __init__(self):
self.color = _ColorSerializer()
self.string = _StringSerializer()
self.vector = _Vector3Serializer()
self.array = _ArraySerializer()
self.bool = _BoolSerializer()
def __init__(self):
self.__string_array = _ArraySerializer()
self.__string_array.set_type(_StringSerializer())
self.__file_data_array = _ArraySerializer()
self.__file_data_array.set_type(_FileDataSerializer())
import os
import traceback
import zlib
from nanome.util import Logs
from nanome._internal._network._serialization import _ContextSerialization, _ContextDeserialization
from nanome._internal._structure._serialization import _WorkspaceSerializer, _AtomSerializer
from nanome._internal._util._serializers import _DictionarySerializer, _StringSerializer, _ByteSerializer, _TypeSerializer, _LongSerializer
# This package uses undocumented network code, in order to reuse already available serialization code
workspace_serializer = _WorkspaceSerializer()
dictionary_serializer = _DictionarySerializer()
dictionary_serializer.set_types(_StringSerializer(), _ByteSerializer())
atom_dictionary_serializer = _DictionarySerializer()
atom_dictionary_serializer.set_types(_LongSerializer(), _AtomSerializer())
def to_data(workspace):
context = _ContextSerialization(0, _TypeSerializer.get_version_table())
context.write_uint(0) # Version
context.write_using_serializer(dictionary_serializer,
_TypeSerializer.get_version_table())
subcontext = context.create_sub_context()
subcontext.payload["Atom"] = {}
subcontext.write_using_serializer(workspace_serializer, workspace)
context.write_using_serializer(atom_dictionary_serializer,
subcontext.payload["Atom"])
context.write_bytes(subcontext.to_array())
def __init__(self):
self.__complex = _ComplexSerializer()
self.__string = _StringSerializer()
self.__dict = _DictionarySerializer()
self.__dict.set_types(_LongSerializer(), _AtomSerializer())
def __init__(self):
self.__string = _StringSerializer()
self.__directory_entry_array = _ArraySerializer()
self.__directory_entry_array.set_type(_DirectoryEntrySerializer())
def __init__(self):
self.string = _StringSerializer()
self.items = _ArraySerializer()
self.items.set_type(_DropdownItemSerializer())
def __init__(self, shallow=False):
self.shallow = shallow
self.array = _ArraySerializer()
self.string = _StringSerializer()
self.dictionary = _DictionarySerializer()
self.dictionary.set_types(self.string, self.string)
def __init__(self):
self.string = _StringSerializer()
self.color = _ColorSerializer()
self.vector = _Vector3Serializer()
def __init__(self):
self.__tuple = _TupleSerializer(_IntSerializer(), _StringSerializer())
def __init__(self):
self.data = _ArraySerializer()
self.data.set_type(_ByteSerializer())
self.color = _ColorSerializer()
self.string = _StringSerializer()
def __init__(self):
self.__array = _ArraySerializer()
self.__array.set_type(_StringSerializer())
