def setUp(self):
super(TestNIDMResultsChange, self).setUp()
self.item = save_nidm_form(
name="fsl_course_av", zip_file=self.abs_data_path("nidm/fsl_course_av.nidm.zip"), collection=self.coll
)
self.item_url = "/api/nidm_results/%s/" % self.item.pk
def setUp(self):
self.user = User.objects.create_user("NeuroGuy")
self.user.save()
self.collection = Collection(owner=self.user, name="Test Collection")
self.collection.save()
zip_file = self.abs_data_path("nidm/spm_example.nidm.zip")
self.nidm = save_nidm_form(zip_file=zip_file, collection=self.collection)
def setUp(self):
super(TestNIDMResultsChange, self).setUp()
self.item = save_nidm_form(
name='fsl_course_av',
zip_file=self.abs_data_path('nidm/fsl_course_av.nidm.zip'),
collection=self.coll)
self.item_url = '/api/nidm_results/%s/' % self.item.pk
def setUp(self):
self.user = User.objects.create_user('NeuroGuy')
self.user.save()
self.collection = Collection(owner=self.user, name="Test Collection")
self.collection.save()
zip_file = self.abs_data_path('nidm/spm_example.nidm.zip')
self.nidm = save_nidm_form(zip_file=zip_file,
collection=self.collection)
def setUp(self):
super(TestNIDMResultsChange, self).setUp()
self.item = save_nidm_form(
name='fsl_course_av',
zip_file=self.abs_file_path(
'test_data/nidm/fsl_course_av.nidm.zip'
),
collection=self.coll
)
self.item_url = '/api/nidm_results/%s/' % self.item.pk
def setUp(self):
self.test_path = os.path.abspath(os.path.dirname(__file__))
self.user = User.objects.create(username='******')
self.client = Client()
self.client.login(username=self.user)
self.Collection1 = Collection(name='Collection1', owner=self.user)
self.Collection1.save()
self.unorderedAtlas = Atlas(name='unorderedAtlas',
description='',
collection=self.Collection1)
# Save new atlas object, unordered
print "Adding unordered and ordered atlas..."
nii_path = os.path.join(
self.test_path,
'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz')
xml_path = os.path.join(
self.test_path,
'test_data/api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml'
)
self.unorderedAtlas = save_atlas_form(nii_path=nii_path,
xml_path=xml_path,
collection=self.Collection1,
name="unorderedAtlas")
# Ordered
nii_path = os.path.join(
self.test_path,
'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz')
xml_path = os.path.join(
self.test_path,
'test_data/api/VentralFrontal_thr75_summaryimage_2mm.xml')
self.orderedAtlas = save_atlas_form(nii_path=nii_path,
xml_path=xml_path,
collection=self.Collection1,
name="orderedAtlas")
# Statistical Map 1 and 2
print "Adding statistical maps..."
nii_path = os.path.join(self.test_path,
'test_data/statmaps/motor_lips.nii.gz')
self.Image1 = save_statmap_form(image_path=nii_path,
collection=self.Collection1)
nii_path = os.path.join(self.test_path,
'test_data/statmaps/beta_0001.nii.gz')
self.Image2 = save_statmap_form(image_path=nii_path,
collection=self.Collection1)
# Zip file with nidm results
print "Adding nidm results..."
zip_file = os.path.join(self.test_path,
'test_data/nidm/spm_example.nidm.zip')
self.nidm = save_nidm_form(zip_file=zip_file,
collection=self.Collection1)
def setUp(self):
self.test_path = os.path.abspath(os.path.dirname(__file__))
self.user = User.objects.create(username='******')
self.client = Client()
self.client.login(username=self.user)
self.Collection1 = Collection(name='Collection1', owner=self.user)
self.Collection1.save()
self.unorderedAtlas = Atlas(
name='unorderedAtlas', description='', collection=self.Collection1)
# Save new atlas object, unordered
print "Adding unordered and ordered atlas..."
nii_path = os.path.join(
self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz')
xml_path = os.path.join(
self.test_path, 'test_data/api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml')
self.unorderedAtlas = save_atlas_form(nii_path=nii_path,
xml_path=xml_path,
collection=self.Collection1,
name="unorderedAtlas")
# Ordered
nii_path = os.path.join(
self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz')
xml_path = os.path.join(
self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.xml')
self.orderedAtlas = save_atlas_form(nii_path=nii_path,
xml_path=xml_path,
collection=self.Collection1,
name="orderedAtlas")
# Statistical Map 1 and 2
print "Adding statistical maps..."
nii_path = os.path.join(
self.test_path, 'test_data/statmaps/motor_lips.nii.gz')
self.Image1 = save_statmap_form(
image_path=nii_path, collection=self.Collection1)
nii_path = os.path.join(
self.test_path, 'test_data/statmaps/beta_0001.nii.gz')
self.Image2 = save_statmap_form(
image_path=nii_path, collection=self.Collection1)
# Zip file with nidm results
print "Adding nidm results..."
zip_file = os.path.join(
self.test_path, 'test_data/nidm/spm_example.nidm.zip')
self.nidm = save_nidm_form(
zip_file=zip_file, collection=self.Collection1)
def setUp(self):
self.user = User.objects.create_user('NeuroGuy')
self.user.save()
self.collection = Collection(owner=self.user, name="Test Collection")
self.collection.save()
self.unorderedAtlas = save_atlas_form(
nii_path=self.abs_data_path(
'api/VentralFrontal_thr75_summaryimage_2mm.nii.gz'
),
xml_path=self.abs_data_path(
'api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml'
),
collection=self.collection,
name="unorderedAtlas"
)
self.image1 = save_statmap_form(
image_path=self.abs_data_path(
'statmaps/motor_lips.nii.gz'
),
collection=self.collection
)
self.image2 = save_statmap_form(
image_path=self.abs_data_path(
'statmaps/beta_0001.nii.gz'
),
collection=self.collection
)
self.nidm = save_nidm_form(
zip_file=self.abs_data_path(
'nidm/spm_example.nidm.zip'
),
collection=self.collection
)
