def setUp(self): super(TestNIDMResultsChange, self).setUp() self.item = save_nidm_form( name="fsl_course_av", zip_file=self.abs_data_path("nidm/fsl_course_av.nidm.zip"), collection=self.coll ) self.item_url = "/api/nidm_results/%s/" % self.item.pk
def setUp(self): self.user = User.objects.create_user("NeuroGuy") self.user.save() self.collection = Collection(owner=self.user, name="Test Collection") self.collection.save() zip_file = self.abs_data_path("nidm/spm_example.nidm.zip") self.nidm = save_nidm_form(zip_file=zip_file, collection=self.collection)
def setUp(self): super(TestNIDMResultsChange, self).setUp() self.item = save_nidm_form( name='fsl_course_av', zip_file=self.abs_data_path('nidm/fsl_course_av.nidm.zip'), collection=self.coll) self.item_url = '/api/nidm_results/%s/' % self.item.pk
def setUp(self): self.user = User.objects.create_user('NeuroGuy') self.user.save() self.collection = Collection(owner=self.user, name="Test Collection") self.collection.save() zip_file = self.abs_data_path('nidm/spm_example.nidm.zip') self.nidm = save_nidm_form(zip_file=zip_file, collection=self.collection)
def setUp(self): super(TestNIDMResultsChange, self).setUp() self.item = save_nidm_form( name='fsl_course_av', zip_file=self.abs_file_path( 'test_data/nidm/fsl_course_av.nidm.zip' ), collection=self.coll ) self.item_url = '/api/nidm_results/%s/' % self.item.pk
def setUp(self): self.test_path = os.path.abspath(os.path.dirname(__file__)) self.user = User.objects.create(username='******') self.client = Client() self.client.login(username=self.user) self.Collection1 = Collection(name='Collection1', owner=self.user) self.Collection1.save() self.unorderedAtlas = Atlas(name='unorderedAtlas', description='', collection=self.Collection1) # Save new atlas object, unordered print "Adding unordered and ordered atlas..." nii_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz') xml_path = os.path.join( self.test_path, 'test_data/api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml' ) self.unorderedAtlas = save_atlas_form(nii_path=nii_path, xml_path=xml_path, collection=self.Collection1, name="unorderedAtlas") # Ordered nii_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz') xml_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.xml') self.orderedAtlas = save_atlas_form(nii_path=nii_path, xml_path=xml_path, collection=self.Collection1, name="orderedAtlas") # Statistical Map 1 and 2 print "Adding statistical maps..." nii_path = os.path.join(self.test_path, 'test_data/statmaps/motor_lips.nii.gz') self.Image1 = save_statmap_form(image_path=nii_path, collection=self.Collection1) nii_path = os.path.join(self.test_path, 'test_data/statmaps/beta_0001.nii.gz') self.Image2 = save_statmap_form(image_path=nii_path, collection=self.Collection1) # Zip file with nidm results print "Adding nidm results..." zip_file = os.path.join(self.test_path, 'test_data/nidm/spm_example.nidm.zip') self.nidm = save_nidm_form(zip_file=zip_file, collection=self.Collection1)
def setUp(self): self.test_path = os.path.abspath(os.path.dirname(__file__)) self.user = User.objects.create(username='******') self.client = Client() self.client.login(username=self.user) self.Collection1 = Collection(name='Collection1', owner=self.user) self.Collection1.save() self.unorderedAtlas = Atlas( name='unorderedAtlas', description='', collection=self.Collection1) # Save new atlas object, unordered print "Adding unordered and ordered atlas..." nii_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz') xml_path = os.path.join( self.test_path, 'test_data/api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml') self.unorderedAtlas = save_atlas_form(nii_path=nii_path, xml_path=xml_path, collection=self.Collection1, name="unorderedAtlas") # Ordered nii_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.nii.gz') xml_path = os.path.join( self.test_path, 'test_data/api/VentralFrontal_thr75_summaryimage_2mm.xml') self.orderedAtlas = save_atlas_form(nii_path=nii_path, xml_path=xml_path, collection=self.Collection1, name="orderedAtlas") # Statistical Map 1 and 2 print "Adding statistical maps..." nii_path = os.path.join( self.test_path, 'test_data/statmaps/motor_lips.nii.gz') self.Image1 = save_statmap_form( image_path=nii_path, collection=self.Collection1) nii_path = os.path.join( self.test_path, 'test_data/statmaps/beta_0001.nii.gz') self.Image2 = save_statmap_form( image_path=nii_path, collection=self.Collection1) # Zip file with nidm results print "Adding nidm results..." zip_file = os.path.join( self.test_path, 'test_data/nidm/spm_example.nidm.zip') self.nidm = save_nidm_form( zip_file=zip_file, collection=self.Collection1)
def setUp(self): self.user = User.objects.create_user('NeuroGuy') self.user.save() self.collection = Collection(owner=self.user, name="Test Collection") self.collection.save() self.unorderedAtlas = save_atlas_form( nii_path=self.abs_data_path( 'api/VentralFrontal_thr75_summaryimage_2mm.nii.gz' ), xml_path=self.abs_data_path( 'api/unordered_VentralFrontal_thr75_summaryimage_2mm.xml' ), collection=self.collection, name="unorderedAtlas" ) self.image1 = save_statmap_form( image_path=self.abs_data_path( 'statmaps/motor_lips.nii.gz' ), collection=self.collection ) self.image2 = save_statmap_form( image_path=self.abs_data_path( 'statmaps/beta_0001.nii.gz' ), collection=self.collection ) self.nidm = save_nidm_form( zip_file=self.abs_data_path( 'nidm/spm_example.nidm.zip' ), collection=self.collection )