Ejemplo n.º 1
0
 def test_addSeqsToAlignment(self):
     """Clustalw addSeqsToAlignment shoudl work as expected"""
     res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\
         'alignseqs')
     self.assertEqual(res['Align'].read(),self.alignseqs)
     self.assertEqual(res['Dendro'].read(),self.treeduringalignseqs)
     res.cleanUp()
Ejemplo n.º 2
0
 def test_buildTreeFromAlignment(self):
     """Clustalw buildTreeFromAlignment shoudl work as expected"""
     pre_res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\
         'alignseqs',WorkingDir='/tmp/ct')
     res = buildTreeFromAlignment('/tmp/ct/alignseqs',WorkingDir='/tmp/ct')
     self.assertEqual(res['Tree'].read(),self.treefromalignseqs)
     
     res.cleanUp()
     pre_res.cleanUp()