def test_addSeqsToAlignment(self): """Clustalw addSeqsToAlignment shoudl work as expected""" res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\ 'alignseqs') self.assertEqual(res['Align'].read(),self.alignseqs) self.assertEqual(res['Dendro'].read(),self.treeduringalignseqs) res.cleanUp()
def test_buildTreeFromAlignment(self): """Clustalw buildTreeFromAlignment shoudl work as expected""" pre_res = addSeqsToAlignment('/tmp/ct/align1','/tmp/ct/seq2.txt',\ 'alignseqs',WorkingDir='/tmp/ct') res = buildTreeFromAlignment('/tmp/ct/alignseqs',WorkingDir='/tmp/ct') self.assertEqual(res['Tree'].read(),self.treefromalignseqs) res.cleanUp() pre_res.cleanUp()