Ejemplo n.º 1
0
 def get_benchmark_genes(self, sql_conn):
     # load Gene->GO-Term associations to get a set of genes to be used in
     # the benchmark
     assoc = load_go_associations_sql(sql_conn)
     # use a list for fast/efficient range access
     genes = list(assoc.keys())
     return genes
Ejemplo n.º 2
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 def load_go_associations(self, sql_conn, only_genes=None):
     return load_go_associations_sql(sql_conn, only_genes)
Ejemplo n.º 3
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 def load_go_associations(self, sql_conn, only_genes=None):
     return load_go_associations_sql(sql_conn, only_genes)