Python load_go_associations_sql Examples

Example #1

File: bpscore_benchmark.py Project: gattofrancesco/tsppi

 def get_benchmark_genes(self, sql_conn):
     # load Gene->GO-Term associations to get a set of genes to be used in
     # the benchmark
     assoc = load_go_associations_sql(sql_conn)
     # use a list for fast/efficient range access
     genes = list(assoc.keys())
     return genes

Example #2

File: similarity.py Project: gattofrancesco/tsppi

 def load_go_associations(self, sql_conn, only_genes=None):
     return load_go_associations_sql(sql_conn, only_genes)

Example #3

 def load_go_associations(self, sql_conn, only_genes=None):
     return load_go_associations_sql(sql_conn, only_genes)