def test_toFofn(self):
self.assertEquals(DataSet("bam1.bam", "bam2.bam",
strict=False).toFofn(),
['bam1.bam', 'bam2.bam'])
realDS = DataSet(data.getXml(8))
files = realDS.toFofn()
self.assertEqual(len(files), 1)
self.assertTrue(os.path.exists(files[0]))
self.assertTrue(os.path.isabs(files[0]))
files = realDS.toFofn(relative=True)
self.assertEqual(len(files), 1)
self.assertTrue(os.path.exists(files[0]))
self.assertFalse(os.path.isabs(files[0]))
def test_toFofn(self):
self.assertEquals(
DataSet("bam1.bam", "bam2.bam", strict=False).toFofn(),
['bam1.bam', 'bam2.bam'])
realDS = DataSet(data.getXml(8))
files = realDS.toFofn()
self.assertEqual(len(files), 1)
self.assertTrue(os.path.exists(files[0]))
self.assertTrue(os.path.isabs(files[0]))
files = realDS.toFofn(relative=True)
self.assertEqual(len(files), 1)
self.assertTrue(os.path.exists(files[0]))
self.assertFalse(os.path.isabs(files[0]))
