def test_toFofn(self): self.assertEquals(DataSet("bam1.bam", "bam2.bam", strict=False).toFofn(), ['bam1.bam', 'bam2.bam']) realDS = DataSet(data.getXml(8)) files = realDS.toFofn() self.assertEqual(len(files), 1) self.assertTrue(os.path.exists(files[0])) self.assertTrue(os.path.isabs(files[0])) files = realDS.toFofn(relative=True) self.assertEqual(len(files), 1) self.assertTrue(os.path.exists(files[0])) self.assertFalse(os.path.isabs(files[0]))
def test_toFofn(self): self.assertEquals( DataSet("bam1.bam", "bam2.bam", strict=False).toFofn(), ['bam1.bam', 'bam2.bam']) realDS = DataSet(data.getXml(8)) files = realDS.toFofn() self.assertEqual(len(files), 1) self.assertTrue(os.path.exists(files[0])) self.assertTrue(os.path.isabs(files[0])) files = realDS.toFofn(relative=True) self.assertEqual(len(files), 1) self.assertTrue(os.path.exists(files[0])) self.assertFalse(os.path.isabs(files[0]))