def deriveDependency(self, aDO, aRO, derivedList):
d1 = ProvDocument() # d1 is now an empty provenance document
d1.add_namespace("dt", "http://cs.ncl.ac.uk/dtsim/")
e1 = d1.entity(DTns + aRO.id) # deriving
ag1 = d1.agent(DTns + str(aDO.id))
for der in derivedList:
# create provlet
e2 = d1.entity(DTns + der.id) # derived
d1.wasAttributedTo(e2, ag1)
d1.wasDerivedFrom(e2, e1)
# update upstream pointer
der.upstream = [(aRO, None)] # aRO is upstream from aRO with no activity
# update downstream
aRO.downstream.append((der, None)) # aR1 is downstream from aR1 with no activity
# update global graph
e1 = pGlobal.entity(DTns + aRO.id) # deriving
ag1 = pGlobal.agent(DTns + str(aDO.id))
pGlobal.wasAttributedTo(e2, ag1)
for der in derivedList:
e2 = pGlobal.entity(DTns + der.id) # derived
pGlobal.wasDerivedFrom(e2, e1)
# trigger credit recomputation
for der in derivedList:
# aRO needs its credit updated with aRO1.credit
aCreditManager.addDerivationCredit(aRO, der.currentTotalCredit)
# self.notify(d1)
return d1
def primer_example():
# https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/primer.pn
# ===========================================================================
# document
g = ProvDocument()
# prefix ex <http://example/>
# prefix dcterms <http://purl.org/dc/terms/>
# prefix foaf <http://xmlns.com/foaf/0.1/>
ex = Namespace(
"ex", "http://example/"
) # namespaces do not need to be explicitly added to a document
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# entity(ex:article, [dcterms:title="Crime rises in cities"])
# first time the ex namespace was used, it is added to the document automatically
g.entity(ex["article"], {"dcterms:title": "Crime rises in cities"})
# entity(ex:articleV1)
g.entity(ex["articleV1"])
# entity(ex:articleV2)
g.entity(ex["articleV2"])
# entity(ex:dataSet1)
g.entity(ex["dataSet1"])
# entity(ex:dataSet2)
g.entity(ex["dataSet2"])
# entity(ex:regionList)
g.entity(ex["regionList"])
# entity(ex:composition)
g.entity(ex["composition"])
# entity(ex:chart1)
g.entity(ex["chart1"])
# entity(ex:chart2)
g.entity(ex["chart2"])
# entity(ex:blogEntry)
g.entity(ex["blogEntry"])
# activity(ex:compile)
g.activity(
"ex:compile") # since ex is registered, it can be used like this
# activity(ex:compile2)
g.activity("ex:compile2")
# activity(ex:compose)
g.activity("ex:compose")
# activity(ex:correct, 2012-03-31T09:21:00, 2012-04-01T15:21:00)
g.activity("ex:correct", "2012-03-31T09:21:00",
"2012-04-01T15:21:00") # date time can be provided as strings
# activity(ex:illustrate)
g.activity("ex:illustrate")
# used(ex:compose, ex:dataSet1, -, [ prov:role = "ex:dataToCompose"])
g.used("ex:compose",
"ex:dataSet1",
other_attributes={"prov:role": "ex:dataToCompose"})
# used(ex:compose, ex:regionList, -, [ prov:role = "ex:regionsToAggregateBy"])
g.used(
"ex:compose",
"ex:regionList",
other_attributes={"prov:role": "ex:regionsToAggregateBy"},
)
# wasGeneratedBy(ex:composition, ex:compose, -)
g.wasGeneratedBy("ex:composition", "ex:compose")
# used(ex:illustrate, ex:composition, -)
g.used("ex:illustrate", "ex:composition")
# wasGeneratedBy(ex:chart1, ex:illustrate, -)
g.wasGeneratedBy("ex:chart1", "ex:illustrate")
# wasGeneratedBy(ex:chart1, ex:compile, 2012-03-02T10:30:00)
g.wasGeneratedBy("ex:chart1", "ex:compile", "2012-03-02T10:30:00")
# wasGeneratedBy(ex:chart2, ex:compile2, 2012-04-01T15:21:00)
#
#
# agent(ex:derek, [ prov:type="prov:Person", foaf:givenName = "Derek",
# foaf:mbox= "<mailto:[email protected]>"])
g.agent(
"ex:derek",
{
"prov:type": PROV["Person"],
"foaf:givenName": "Derek",
"foaf:mbox": "<mailto:[email protected]>",
},
)
# wasAssociatedWith(ex:compose, ex:derek, -)
g.wasAssociatedWith("ex:compose", "ex:derek")
# wasAssociatedWith(ex:illustrate, ex:derek, -)
g.wasAssociatedWith("ex:illustrate", "ex:derek")
#
# agent(ex:chartgen, [ prov:type="prov:Organization",
# foaf:name = "Chart Generators Inc"])
g.agent(
"ex:chartgen",
{
"prov:type": PROV["Organization"],
"foaf:name": "Chart Generators Inc"
},
)
# actedOnBehalfOf(ex:derek, ex:chartgen, ex:compose)
g.actedOnBehalfOf("ex:derek", "ex:chartgen", "ex:compose")
# wasAttributedTo(ex:chart1, ex:derek)
g.wasAttributedTo("ex:chart1", "ex:derek")
# wasGeneratedBy(ex:dataSet2, ex:correct, -)
g.wasGeneratedBy("ex:dataSet2", "ex:correct")
# used(ex:correct, ex:dataSet1, -)
g.used("ex:correct", "ex:dataSet1")
# wasDerivedFrom(ex:dataSet2, ex:dataSet1, [prov:type='prov:Revision'])
g.wasDerivedFrom("ex:dataSet2",
"ex:dataSet1",
other_attributes={"prov:type": PROV["Revision"]})
# wasDerivedFrom(ex:chart2, ex:dataSet2)
g.wasDerivedFrom("ex:chart2", "ex:dataSet2")
# wasDerivedFrom(ex:blogEntry, ex:article, [prov:type='prov:Quotation'])
g.wasDerivedFrom("ex:blogEntry",
"ex:article",
other_attributes={"prov:type": PROV["Quotation"]})
# specializationOf(ex:articleV1, ex:article)
g.specializationOf("ex:articleV1", "ex:article")
# wasDerivedFrom(ex:articleV1, ex:dataSet1)
g.wasDerivedFrom("ex:articleV1", "ex:dataSet1")
# specializationOf(ex:articleV2, ex:article)
g.specializationOf("ex:articleV2", "ex:article")
# wasDerivedFrom(ex:articleV2, ex:dataSet2)
g.wasDerivedFrom("ex:articleV2", "ex:dataSet2")
# alternateOf(ex:articleV2, ex:articleV1)
g.alternateOf("ex:articleV2", "ex:articleV1")
# endDocument
return g
def w3c_publication_2():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn
# ===========================================================================
# bundle
#
# prefix ex <http://example.org/>
# prefix rec <http://example.org/record>
#
# prefix w3 <http://www.w3.org/TR/2011/>
# prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/>
#
#
# entity(hg:Overview.html, [ prov:type="file in hg" ])
# entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ])
#
#
# activity(ex:rcp,-,-,[prov:type="copy directory"])
#
# wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -)
#
# entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ])
#
# used(rec:u; ex:rcp,hg:Overview.html,-)
# used(ex:rcp, ex:req3, -)
#
#
# wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u)
#
# agent(ex:webmaster, [ prov:type='prov:Person' ])
#
# wasAssociatedWith(ex:rcp, ex:webmaster, -)
#
# endBundle
# ===========================================================================
ex = Namespace("ex", "http://example.org/")
rec = Namespace("rec", "http://example.org/record")
w3 = Namespace("w3", "http://www.w3.org/TR/2011/")
hg = Namespace(
"hg",
"http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/",
)
g = ProvDocument()
g.entity(hg["Overview.html"], {"prov:type": "file in hg"})
g.entity(w3["WD-prov-dm-20111215"], {"prov:type": "html4"})
g.activity(ex["rcp"], None, None, {"prov:type": "copy directory"})
g.wasGeneratedBy("w3:WD-prov-dm-20111215", "ex:rcp", identifier=rec["g"])
g.entity(
"ex:req3",
{
"prov:type":
Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")
},
)
g.used("ex:rcp", "hg:Overview.html", identifier="rec:u")
g.used("ex:rcp", "ex:req3")
g.wasDerivedFrom("w3:WD-prov-dm-20111215", "hg:Overview.html", "ex:rcp",
"rec:g", "rec:u")
g.agent("ex:webmaster", {"prov:type": "Person"})
g.wasAssociatedWith("ex:rcp", "ex:webmaster")
return g
def w3c_publication_1():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn
# ===========================================================================
# bundle
#
# prefix ex <http://example.org/>
#
# prefix w3 <http://www.w3.org/>
# prefix tr <http://www.w3.org/TR/2011/>
# prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#>
# prefix email <https://lists.w3.org/Archives/Member/w3c-archive/>
# prefix chairs <https://lists.w3.org/Archives/Member/chairs/>
# prefix trans <http://www.w3.org/2005/08/01-transitions.html#>
# prefix rec54 <http://www.w3.org/2001/02pd/rec54#>
#
#
# entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ])
# entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ])
# entity(process:rec-advance, [ prov:type='prov:Plan' ])
#
#
# entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ])
# entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ])
# entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ])
#
#
# wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018)
#
#
# activity(ex:act1,-,-,[prov:type="publish"])
# activity(ex:act2,-,-,[prov:type="publish"])
#
# wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -)
# wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
#
# used(ex:act1, chairs:2011OctDec/0004, -)
# used(ex:act1, email:2011Oct/0141, -)
# used(ex:act2, email:2011Dec/0111, -)
#
# agent(w3:Consortium, [ prov:type='prov:Organization' ])
#
# wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance)
# wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance)
#
# endBundle
# ===========================================================================
g = ProvDocument()
g.add_namespace("ex", "http://example.org/")
g.add_namespace("w3", "http://www.w3.org/")
g.add_namespace("tr", "http://www.w3.org/TR/2011/")
g.add_namespace("process",
"http://www.w3.org/2005/10/Process-20051014/tr.html#")
g.add_namespace("email",
"https://lists.w3.org/Archives/Member/w3c-archive/")
g.add_namespace("chairs", "https://lists.w3.org/Archives/Member/chairs/")
g.add_namespace("trans", "http://www.w3.org/2005/08/01-transitions.html#")
g.add_namespace("rec54", "http://www.w3.org/2001/02pd/rec54#")
g.entity("tr:WD-prov-dm-20111018", {"prov:type": "rec54:WD"})
g.entity("tr:WD-prov-dm-20111215", {"prov:type": "rec54:WD"})
g.entity("process:rec-advance", {"prov:type": "prov:Plan"})
g.entity("chairs:2011OctDec/0004", {"prov:type": "trans:transreq"})
g.entity("email:2011Oct/0141", {"prov:type": "trans:pubreq"})
g.entity("email:2011Dec/0111", {"prov:type": "trans:pubreq"})
g.wasDerivedFrom("tr:WD-prov-dm-20111215", "tr:WD-prov-dm-20111018")
g.activity("ex:act1", other_attributes={"prov:type": "publish"})
g.activity("ex:act2", other_attributes={"prov:type": "publish"})
g.wasGeneratedBy("tr:WD-prov-dm-20111018", "ex:act1")
g.wasGeneratedBy("tr:WD-prov-dm-20111215", "ex:act2")
g.used("ex:act1", "chairs:2011OctDec/0004")
g.used("ex:act1", "email:2011Oct/0141")
g.used("ex:act2", "email:2011Dec/0111")
g.agent("w3:Consortium", other_attributes={"prov:type": "Organization"})
g.wasAssociatedWith("ex:act1", "w3:Consortium", "process:rec-advance")
g.wasAssociatedWith("ex:act2", "w3:Consortium", "process:rec-advance")
return g
class Provenance(object):
def __init__(self, output_dir):
self.output_dir = output_dir
self.doc = None
self.workflow = None
def start(self, workflow=False):
from daops import __version__ as daops_version
from housemartin import __version__ as housemartin_version
self.doc = ProvDocument()
# Declaring namespaces for various prefixes
self.doc.set_default_namespace(uri="http://purl.org/roocs/prov#")
self.doc.add_namespace("prov", uri="http://www.w3.org/ns/prov#")
self.doc.add_namespace(
"provone", uri="http://purl.dataone.org/provone/2015/01/15/ontology#"
)
self.doc.add_namespace("dcterms", uri="http://purl.org/dc/terms/")
# Define entities
project_cds = self.doc.agent(
":copernicus_CDS",
{
"prov:type": "prov:Organization",
"dcterms:title": "Copernicus Climate Data Store",
},
)
self.sw_housemartin = self.doc.agent(
":housemartin",
{
"prov:type": "prov:SoftwareAgent",
"dcterms:source": f"https://github.com/cedadev/housemartin/releases/tag/v{housemartin_version}",
},
)
self.doc.wasAttributedTo(self.sw_housemartin, project_cds)
self.sw_daops = self.doc.agent(
":daops",
{
"prov:type": "prov:SoftwareAgent",
"dcterms:source": f"https://github.com/roocs/daops/releases/tag/v{daops_version}",
},
)
# workflow
if workflow is True:
self.workflow = self.doc.entity(
":workflow", {"prov:type": "provone:Workflow"}
)
orchestrate = self.doc.activity(
":orchestrate",
other_attributes={
"prov:startedAtTime": "2020-11-26T09:15:00",
"prov:endedAtTime": "2020-11-26T09:30:00",
},
)
self.doc.wasAssociatedWith(
orchestrate, agent=self.sw_housemartin, plan=self.workflow
)
def add_operator(self, operator, parameters, collection, output):
op = self.doc.activity(
f":{operator}",
other_attributes={
":time": parameters.get("time"),
":apply_fixes": parameters.get("apply_fixes"),
},
)
# input data
ds_in = os.path.basename(collection[0])
# ds_in_attrs = {
# 'prov:type': 'provone:Data',
# 'prov:value': f'{ds_in}',
# }
op_in = self.doc.entity(f":{ds_in}")
# operator started by daops
if self.workflow:
self.doc.wasAssociatedWith(op, agent=self.sw_daops, plan=self.workflow)
else:
self.doc.start(op, starter=self.sw_daops, trigger=self.sw_housemartin)
# Generated output file
ds_out = os.path.basename(output[0])
# ds_out_attrs = {
# 'prov:type': 'provone:Data',
# 'prov:value': f'{ds_out}',
# }
op_out = self.doc.entity(f":{ds_out}")
self.doc.wasDerivedFrom(op_out, op_in, activity=op)
def write_json(self):
outfile = os.path.join(self.output_dir, "provenance.json")
self.doc.serialize(outfile, format="json")
return outfile
def write_png(self):
outfile = os.path.join(self.output_dir, "provenance.png")
figure = prov_to_dot(self.doc)
figure.write_png(outfile)
return outfile
def primer_example():
# https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/primer.pn
#===========================================================================
# document
g = ProvDocument()
# prefix ex <http://example/>
# prefix dcterms <http://purl.org/dc/terms/>
# prefix foaf <http://xmlns.com/foaf/0.1/>
ex = Namespace('ex', 'http://example/') # namespaces do not need to be explicitly added to a document
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# entity(ex:article, [dcterms:title="Crime rises in cities"])
# first time the ex namespace was used, it is added to the document automatically
g.entity(ex['article'], {'dcterms:title': "Crime rises in cities"})
# entity(ex:articleV1)
g.entity(ex['articleV1'])
# entity(ex:articleV2)
g.entity(ex['articleV2'])
# entity(ex:dataSet1)
g.entity(ex['dataSet1'])
# entity(ex:dataSet2)
g.entity(ex['dataSet2'])
# entity(ex:regionList)
g.entity(ex['regionList'])
# entity(ex:composition)
g.entity(ex['composition'])
# entity(ex:chart1)
g.entity(ex['chart1'])
# entity(ex:chart2)
g.entity(ex['chart2'])
# entity(ex:blogEntry)
g.entity(ex['blogEntry'])
# activity(ex:compile)
g.activity('ex:compile') # since ex is registered, it can be used like this
# activity(ex:compile2)
g.activity('ex:compile2')
# activity(ex:compose)
g.activity('ex:compose')
# activity(ex:correct, 2012-03-31T09:21:00, 2012-04-01T15:21:00)
g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00') # date time can be provided as strings
# activity(ex:illustrate)
g.activity('ex:illustrate')
# used(ex:compose, ex:dataSet1, -, [ prov:role = "ex:dataToCompose"])
g.used('ex:compose', 'ex:dataSet1', other_attributes={'prov:role': "ex:dataToCompose"})
# used(ex:compose, ex:regionList, -, [ prov:role = "ex:regionsToAggregateBy"])
g.used('ex:compose', 'ex:regionList', other_attributes={'prov:role': "ex:regionsToAggregateBy"})
# wasGeneratedBy(ex:composition, ex:compose, -)
g.wasGeneratedBy('ex:composition', 'ex:compose')
# used(ex:illustrate, ex:composition, -)
g.used('ex:illustrate', 'ex:composition')
# wasGeneratedBy(ex:chart1, ex:illustrate, -)
g.wasGeneratedBy('ex:chart1', 'ex:illustrate')
# wasGeneratedBy(ex:chart1, ex:compile, 2012-03-02T10:30:00)
g.wasGeneratedBy('ex:chart1', 'ex:compile', '2012-03-02T10:30:00')
# wasGeneratedBy(ex:chart2, ex:compile2, 2012-04-01T15:21:00)
#
#
# agent(ex:derek, [ prov:type="prov:Person", foaf:givenName = "Derek",
# foaf:mbox= "<mailto:[email protected]>"])
g.agent('ex:derek', {
'prov:type': PROV["Person"], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:[email protected]>"
})
# wasAssociatedWith(ex:compose, ex:derek, -)
g.wasAssociatedWith('ex:compose', 'ex:derek')
# wasAssociatedWith(ex:illustrate, ex:derek, -)
g.wasAssociatedWith('ex:illustrate', 'ex:derek')
#
# agent(ex:chartgen, [ prov:type="prov:Organization",
# foaf:name = "Chart Generators Inc"])
g.agent('ex:chartgen', {'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc"})
# actedOnBehalfOf(ex:derek, ex:chartgen, ex:compose)
g.actedOnBehalfOf('ex:derek', 'ex:chartgen', 'ex:compose')
# wasAttributedTo(ex:chart1, ex:derek)
g.wasAttributedTo('ex:chart1', 'ex:derek')
# wasGeneratedBy(ex:dataSet2, ex:correct, -)
g.wasGeneratedBy('ex:dataSet2', 'ex:correct')
# used(ex:correct, ex:dataSet1, -)
g.used('ex:correct', 'ex:dataSet1')
# wasDerivedFrom(ex:dataSet2, ex:dataSet1, [prov:type='prov:Revision'])
g.wasDerivedFrom('ex:dataSet2', 'ex:dataSet1', other_attributes={'prov:type': PROV['Revision']})
# wasDerivedFrom(ex:chart2, ex:dataSet2)
g.wasDerivedFrom('ex:chart2', 'ex:dataSet2')
# wasDerivedFrom(ex:blogEntry, ex:article, [prov:type='prov:Quotation'])
g.wasDerivedFrom('ex:blogEntry', 'ex:article', other_attributes={'prov:type': PROV['Quotation']})
# specializationOf(ex:articleV1, ex:article)
g.specializationOf('ex:articleV1', 'ex:article')
# wasDerivedFrom(ex:articleV1, ex:dataSet1)
g.wasDerivedFrom('ex:articleV1', 'ex:dataSet1')
# specializationOf(ex:articleV2, ex:article)
g.specializationOf('ex:articleV2', 'ex:article')
# wasDerivedFrom(ex:articleV2, ex:dataSet2)
g.wasDerivedFrom('ex:articleV2', 'ex:dataSet2')
# alternateOf(ex:articleV2, ex:articleV1)
g.alternateOf('ex:articleV2', 'ex:articleV1')
# endDocument
return g
def w3c_publication_2():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
# prefix rec <http://example.org/record>
#
# prefix w3 <http://www.w3.org/TR/2011/>
# prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/>
#
#
# entity(hg:Overview.html, [ prov:type="file in hg" ])
# entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ])
#
#
# activity(ex:rcp,-,-,[prov:type="copy directory"])
#
# wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -)
#
# entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ])
#
# used(rec:u; ex:rcp,hg:Overview.html,-)
# used(ex:rcp, ex:req3, -)
#
#
# wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u)
#
# agent(ex:webmaster, [ prov:type='prov:Person' ])
#
# wasAssociatedWith(ex:rcp, ex:webmaster, -)
#
# endBundle
#===========================================================================
ex = Namespace('ex', 'http://example.org/')
rec = Namespace('rec', 'http://example.org/record')
w3 = Namespace('w3', 'http://www.w3.org/TR/2011/')
hg = Namespace('hg', 'http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/')
g = ProvDocument()
g.entity(hg['Overview.html'], {'prov:type': "file in hg"})
g.entity(w3['WD-prov-dm-20111215'], {'prov:type': "html4"})
g.activity(ex['rcp'], None, None, {'prov:type': "copy directory"})
g.wasGeneratedBy('w3:WD-prov-dm-20111215', 'ex:rcp', identifier=rec['g'])
g.entity('ex:req3', {'prov:type': Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")})
g.used('ex:rcp', 'hg:Overview.html', identifier='rec:u')
g.used('ex:rcp', 'ex:req3')
g.wasDerivedFrom('w3:WD-prov-dm-20111215', 'hg:Overview.html', 'ex:rcp', 'rec:g', 'rec:u')
g.agent('ex:webmaster', {'prov:type': "Person"})
g.wasAssociatedWith('ex:rcp', 'ex:webmaster')
return g
def w3c_publication_1():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
#
# prefix w3 <http://www.w3.org/>
# prefix tr <http://www.w3.org/TR/2011/>
# prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#>
# prefix email <https://lists.w3.org/Archives/Member/w3c-archive/>
# prefix chairs <https://lists.w3.org/Archives/Member/chairs/>
# prefix trans <http://www.w3.org/2005/08/01-transitions.html#>
# prefix rec54 <http://www.w3.org/2001/02pd/rec54#>
#
#
# entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ])
# entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ])
# entity(process:rec-advance, [ prov:type='prov:Plan' ])
#
#
# entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ])
# entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ])
# entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ])
#
#
# wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018)
#
#
# activity(ex:act1,-,-,[prov:type="publish"])
# activity(ex:act2,-,-,[prov:type="publish"])
#
# wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -)
# wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
#
# used(ex:act1, chairs:2011OctDec/0004, -)
# used(ex:act1, email:2011Oct/0141, -)
# used(ex:act2, email:2011Dec/0111, -)
#
# agent(w3:Consortium, [ prov:type='prov:Organization' ])
#
# wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance)
# wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance)
#
# endBundle
#===========================================================================
g = ProvDocument()
g.add_namespace('ex', 'http://example.org/')
g.add_namespace('w3', 'http://www.w3.org/')
g.add_namespace('tr', 'http://www.w3.org/TR/2011/')
g.add_namespace('process', 'http://www.w3.org/2005/10/Process-20051014/tr.html#')
g.add_namespace('email', 'https://lists.w3.org/Archives/Member/w3c-archive/')
g.add_namespace('chairs', 'https://lists.w3.org/Archives/Member/chairs/')
g.add_namespace('trans', 'http://www.w3.org/2005/08/01-transitions.html#')
g.add_namespace('rec54', 'http://www.w3.org/2001/02pd/rec54#')
g.entity('tr:WD-prov-dm-20111018', {'prov:type': 'rec54:WD'})
g.entity('tr:WD-prov-dm-20111215', {'prov:type': 'rec54:WD'})
g.entity('process:rec-advance', {'prov:type': 'prov:Plan'})
g.entity('chairs:2011OctDec/0004', {'prov:type': 'trans:transreq'})
g.entity('email:2011Oct/0141', {'prov:type': 'trans:pubreq'})
g.entity('email:2011Dec/0111', {'prov:type': 'trans:pubreq'})
g.wasDerivedFrom('tr:WD-prov-dm-20111215', 'tr:WD-prov-dm-20111018')
g.activity('ex:act1', other_attributes={'prov:type': "publish"})
g.activity('ex:act2', other_attributes={'prov:type': "publish"})
g.wasGeneratedBy('tr:WD-prov-dm-20111018', 'ex:act1')
g.wasGeneratedBy('tr:WD-prov-dm-20111215', 'ex:act2')
g.used('ex:act1', 'chairs:2011OctDec/0004')
g.used('ex:act1', 'email:2011Oct/0141')
g.used('ex:act2', 'email:2011Dec/0111')
g.agent('w3:Consortium', other_attributes={'prov:type': "Organization"})
g.wasAssociatedWith('ex:act1', 'w3:Consortium', 'process:rec-advance')
g.wasAssociatedWith('ex:act2', 'w3:Consortium', 'process:rec-advance')
return g
def example():
g = ProvDocument()
# Local namespace
# Doesnt exist yet so we are creating it
ap = Namespace('aip', 'https://araport.org/provenance/')
# Dublin Core
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
# FOAF
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# Add sponsors and contributors as Agents
# ap['matthew_vaughn']
# aip:matthew_vaughn
# https://araport.org/provenance/:matthew_vaughn
# Learn this from a call to profiles service? Adds a dependency on Agave so I am open to figuring out another way
me = g.agent(
ap['matthew_vaughn'], {
'prov:type': PROV["Person"],
'foaf:givenName': "Matthew Vaughn",
'foaf:mbox': "<mailto:[email protected]>"
})
# Hard coded for now
walter = g.agent(
ap['walter_moreira'], {
'prov:type': PROV["Person"],
'foaf:givenName': "Walter Moreira",
'foaf:mbox': "<mailto:[email protected]>"
})
utexas = g.agent(
ap['university_of_texas'], {
'prov:type': PROV["Organization"],
'foaf:givenName': "University of Texas at Austin"
})
# Set delegation to our host University
# We may have trouble doing this for other users since we don't always capture their host instituion
g.actedOnBehalfOf(walter, utexas)
g.actedOnBehalfOf(me, utexas)
# Include the ADAMA platform as an Agent and set attribution
# dcterms:title and dcterms:description are hardcoded
# dcterms:language is hard-coded
# dcterms:source is the URI of the public git source repository for ADAMA
# "dcterms:updated": "2015-04-17T09:44:56" - this would actually be the date ADAMA was updated
adama_platform = g.agent(
ap['adama_platform'], {
'dcterms:title': "ADAMA",
'dcterms:description': "Araport Data and Microservices API",
'dcterms:language': "en-US",
'dcterms:identifier': "https://api.araport.org/community/v0.3/",
'dcterms:updated': "2015-04-17T09:44:56"
})
g.wasGeneratedBy(adama_platform, walter)
# Include the ADAMA microservice as an Agent and set attribution+delegation
# dcterms:title and dcterms:description are inherited from the service's metadata
# dcterms:language is hard-coded
# dcterms:identifier is the deployment URI for the service
# dcterms:source is the URI of the public git source repository. The URL in this example is just a dummy
#
# The name for each microservice should be unique. We've decided to
# use the combination of namespace, service name, and version
microservice_name = 'mwvaughn/bar_annotation_v1.0.0'
adama_microservice = g.agent(
ap[microservice_name], {
'dcterms:title':
"BAR Annotation Service",
'dcterms:description':
"Returns annotation from locus ID",
'dcterms:language':
"en-US",
'dcterms:identifier':
"https://api.araport.org/community/v0.3/mwvaughn/bar_annotation_v1.0.0",
'dcterms:source':
"https://github.com/Arabidopsis-Information-Portal/prov-enabled-api-sample"
})
# the microservice was generated by me on date X (don't use now, use when the service was updated)
g.wasGeneratedBy(adama_microservice, me, datetime.datetime.now())
# The microservice used the platform now
g.used(adama_microservice, adama_platform, datetime.datetime.now())
# Sources
#
# Define BAR
# Agents
nick = g.agent(
ap['nicholas_provart'], {
'prov:type': PROV["Person"],
'foaf:givenName': "Nicholas Provart",
'foaf:mbox': "*****@*****.**"
})
utoronto = g.agent(
ap['university_of_toronto'], {
'prov:type': PROV["Organization"],
'foaf:givenName': "University of Toronto",
'dcterms:identifier': "http://www.utoronto.ca/"
})
g.actedOnBehalfOf(nick, utoronto)
# Entity
# All fields derived from Sources.yml
# dcterms:title and dcterms:description come straight from the YAML
# dcterms:identifier - URI pointing to the source's canonical URI representation
# optional - dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
# optional - dcterms:updated: date the source was published or last updated
# optional - dcterms:license: Simple string or URI to license. Validate URI if provided?
datasource1 = g.entity(
ap['datasource1'], {
'dcterms:title': "BAR Arabidopsis AGI -> Annotation",
'dcterms:description': "Most recent annotation for given AGI",
'dcterms:language': "en-US",
'dcterms:identifier':
"http://bar.utoronto.ca/webservices/agiToAnnot.php",
'dcterms:updated': "2015-04-17T09:44:56",
'dcterms:license': "Creative Commons 3.0"
})
# Set up attribution to Nick
g.wasAttributedTo(datasource1, nick)
# Define TAIR
# Agents
# dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
eva = g.agent(ap['eva_huala'], {
'prov:type': PROV["Person"],
'foaf:givenName': "Eva Huala"
})
phoenix = g.agent(
ap['phoenix_bioinformatics'], {
'prov:type': PROV["Organization"],
'foaf:givenName': "Phoenix Bioinformatics"
})
g.actedOnBehalfOf(eva, phoenix)
# Entity
# All fields derived from Sources.yml
# optional - dcterms:citation: Plain text bibliographic citation. If only provided as doi, should we try to validate it?
datasource2 = g.entity(
ap['datasource2'], {
'dcterms:title':
"TAIR",
'dcterms:description':
"The Arabidopsis Information Resource",
'dcterms:language':
"en-US",
'dcterms:identifier':
"https://www.arabidopsis.org/",
'dcterms:citation':
"The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research 2011 doi: 10.1093/nar/gkr1090"
})
g.wasAttributedTo(datasource2, eva)
# In Sources.yml, these two sources are nested. Define that relationship here
# There are other types of relationships but we will just use derived from for simplicity in this prototype
g.wasDerivedFrom(ap['datasource1'], ap['datasource2'])
# Depending on which ADAMA microservice type we are using, define an activity
# Eventually, break these into more atomic actions in a chain
action1 = g.activity(ap['do_query'], datetime.datetime.now())
# action1 = g.activity(ap['do_map'], datetime.datetime.now())
# action1 = g.activity(ap['do_generic'], datetime.datetime.now())
# action1 = g.activity(ap['do_passthrough'], datetime.datetime.now())
# Future... Support for ADAMA-native microservices
# action1 = g.activity(ap['generate'], datetime.datetime.now())
# Define current ADAMA response as an Entity
# This is what's being returned to the user and is thus the subject of the PROV record
# May be able to add more attributes to it but this is the minimum
response = g.entity(ap['adama_response'])
# Response is generated by the process_query action
# Time-stamp it!
g.wasGeneratedBy(response, ap['do_query'], datetime.datetime.now())
# The process_query used the microservice
g.used(ap['do_query'], adama_microservice, datetime.datetime.now())
# The microservice used datasource1
g.used(adama_microservice, datasource1, datetime.datetime.now())
# Print prov_n
print(g.get_provn())
# Print prov-json
print(g.serialize())
# Write out as a pretty picture
graph = prov.dot.prov_to_dot(g)
graph.write_png('Sources.png')
def example():
g = ProvDocument()
# Local namespace
# Doesnt exist yet so we are creating it
ap = Namespace('aip', 'https://araport.org/provenance/')
# Dublin Core
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
# FOAF
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# Add sponsors and contributors as Agents
# ap['matthew_vaughn']
# aip:matthew_vaughn
# https://araport.org/provenance/:matthew_vaughn
# Learn this from a call to profiles service? Adds a dependency on Agave so I am open to figuring out another way
me = g.agent(ap['matthew_vaughn'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Matthew Vaughn", 'foaf:mbox': "<mailto:[email protected]>"
})
# Hard coded for now
walter = g.agent(ap['walter_moreira'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Walter Moreira", 'foaf:mbox': "<mailto:[email protected]>"
})
utexas = g.agent(ap['university_of_texas'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "University of Texas at Austin"
})
# Set delegation to our host University
# We may have trouble doing this for other users since we don't always capture their host instituion
g.actedOnBehalfOf(walter, utexas)
g.actedOnBehalfOf(me, utexas)
# Include the ADAMA platform as an Agent and set attribution
# dcterms:title and dcterms:description are hardcoded
# dcterms:language is hard-coded
# dcterms:source is the URI of the public git source repository for ADAMA
# "dcterms:updated": "2015-04-17T09:44:56" - this would actually be the date ADAMA was updated
adama_platform = g.agent(ap['adama_platform'], {'dcterms:title': "ADAMA", 'dcterms:description': "Araport Data and Microservices API", 'dcterms:language':"en-US", 'dcterms:identifier':"https://api.araport.org/community/v0.3/", 'dcterms:updated': "2015-04-17T09:44:56" })
g.wasGeneratedBy(adama_platform, walter)
# Include the ADAMA microservice as an Agent and set attribution+delegation
# dcterms:title and dcterms:description are inherited from the service's metadata
# dcterms:language is hard-coded
# dcterms:identifier is the deployment URI for the service
# dcterms:source is the URI of the public git source repository. The URL in this example is just a dummy
#
# The name for each microservice should be unique. We've decided to
# use the combination of namespace, service name, and version
microservice_name = 'mwvaughn/bar_annotation_v1.0.0'
adama_microservice = g.agent(ap[microservice_name], {'dcterms:title': "BAR Annotation Service", 'dcterms:description': "Returns annotation from locus ID", 'dcterms:language':"en-US", 'dcterms:identifier':"https://api.araport.org/community/v0.3/mwvaughn/bar_annotation_v1.0.0", 'dcterms:source':"https://github.com/Arabidopsis-Information-Portal/prov-enabled-api-sample" })
# the microservice was generated by me on date X (don't use now, use when the service was updated)
g.wasGeneratedBy(adama_microservice, me, datetime.datetime.now())
# The microservice used the platform now
g.used(adama_microservice, adama_platform, datetime.datetime.now())
# Sources
#
# Define BAR
# Agents
nick = g.agent(ap['nicholas_provart'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Nicholas Provart", 'foaf:mbox': "*****@*****.**"
})
utoronto = g.agent(ap['university_of_toronto'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "University of Toronto", 'dcterms:identifier':"http://www.utoronto.ca/"
})
g.actedOnBehalfOf(nick, utoronto)
# Entity
# All fields derived from Sources.yml
# dcterms:title and dcterms:description come straight from the YAML
# dcterms:identifier - URI pointing to the source's canonical URI representation
# optional - dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
# optional - dcterms:updated: date the source was published or last updated
# optional - dcterms:license: Simple string or URI to license. Validate URI if provided?
datasource1 = g.entity(ap['datasource1'], {'dcterms:title': "BAR Arabidopsis AGI -> Annotation", 'dcterms:description': "Most recent annotation for given AGI", 'dcterms:language':"en-US", 'dcterms:identifier':"http://bar.utoronto.ca/webservices/agiToAnnot.php", 'dcterms:updated':"2015-04-17T09:44:56", 'dcterms:license':"Creative Commons 3.0" })
# Set up attribution to Nick
g.wasAttributedTo(datasource1, nick)
# Define TAIR
# Agents
# dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
eva = g.agent(ap['eva_huala'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Eva Huala"
})
phoenix = g.agent(ap['phoenix_bioinformatics'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "Phoenix Bioinformatics"
})
g.actedOnBehalfOf(eva, phoenix)
# Entity
# All fields derived from Sources.yml
# optional - dcterms:citation: Plain text bibliographic citation. If only provided as doi, should we try to validate it?
datasource2 = g.entity(ap['datasource2'], {'dcterms:title': "TAIR", 'dcterms:description': "The Arabidopsis Information Resource", 'dcterms:language':"en-US", 'dcterms:identifier':"https://www.arabidopsis.org/", 'dcterms:citation':"The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research 2011 doi: 10.1093/nar/gkr1090"})
g.wasAttributedTo(datasource2, eva)
# In Sources.yml, these two sources are nested. Define that relationship here
# There are other types of relationships but we will just use derived from for simplicity in this prototype
g.wasDerivedFrom(ap['datasource1'], ap['datasource2'])
# Depending on which ADAMA microservice type we are using, define an activity
# Eventually, break these into more atomic actions in a chain
action1 = g.activity(ap['do_query'], datetime.datetime.now())
# action1 = g.activity(ap['do_map'], datetime.datetime.now())
# action1 = g.activity(ap['do_generic'], datetime.datetime.now())
# action1 = g.activity(ap['do_passthrough'], datetime.datetime.now())
# Future... Support for ADAMA-native microservices
# action1 = g.activity(ap['generate'], datetime.datetime.now())
# Define current ADAMA response as an Entity
# This is what's being returned to the user and is thus the subject of the PROV record
# May be able to add more attributes to it but this is the minimum
response = g.entity(ap['adama_response'])
# Response is generated by the process_query action
# Time-stamp it!
g.wasGeneratedBy(response, ap['do_query'], datetime.datetime.now())
# The process_query used the microservice
g.used(ap['do_query'], adama_microservice, datetime.datetime.now())
# The microservice used datasource1
g.used(adama_microservice, datasource1, datetime.datetime.now())
# Print prov_n
print(g.get_provn())
# Print prov-json
print(g.serialize())
# Write out as a pretty picture
graph = prov.dot.prov_to_dot(g)
graph.write_png('Sources.png')
def w3c_publication_2():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
# prefix rec <http://example.org/record>
#
# prefix w3 <http://www.w3.org/TR/2011/>
# prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/>
#
#
# entity(hg:Overview.html, [ prov:type="file in hg" ])
# entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ])
#
#
# activity(ex:rcp,-,-,[prov:type="copy directory"])
#
# wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -)
#
# entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ])
#
# used(rec:u; ex:rcp,hg:Overview.html,-)
# used(ex:rcp, ex:req3, -)
#
#
# wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u)
#
# agent(ex:webmaster, [ prov:type='prov:Person' ])
#
# wasAssociatedWith(ex:rcp, ex:webmaster, -)
#
# endBundle
#===========================================================================
ex = Namespace('ex', 'http://example.org/')
rec = Namespace('rec', 'http://example.org/record')
w3 = Namespace('w3', 'http://www.w3.org/TR/2011/')
hg = Namespace(
'hg',
'http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/'
)
g = ProvDocument()
g.entity(hg['Overview.html'], {'prov:type': "file in hg"})
g.entity(w3['WD-prov-dm-20111215'], {'prov:type': "html4"})
g.activity(ex['rcp'], None, None, {'prov:type': "copy directory"})
g.wasGeneratedBy('w3:WD-prov-dm-20111215', 'ex:rcp', identifier=rec['g'])
g.entity(
'ex:req3', {
'prov:type':
Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")
})
g.used('ex:rcp', 'hg:Overview.html', identifier='rec:u')
g.used('ex:rcp', 'ex:req3')
g.wasDerivedFrom('w3:WD-prov-dm-20111215', 'hg:Overview.html', 'ex:rcp',
'rec:g', 'rec:u')
g.agent('ex:webmaster', {'prov:type': "Person"})
g.wasAssociatedWith('ex:rcp', 'ex:webmaster')
return g
def w3c_publication_1():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
#
# prefix w3 <http://www.w3.org/>
# prefix tr <http://www.w3.org/TR/2011/>
# prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#>
# prefix email <https://lists.w3.org/Archives/Member/w3c-archive/>
# prefix chairs <https://lists.w3.org/Archives/Member/chairs/>
# prefix trans <http://www.w3.org/2005/08/01-transitions.html#>
# prefix rec54 <http://www.w3.org/2001/02pd/rec54#>
#
#
# entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ])
# entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ])
# entity(process:rec-advance, [ prov:type='prov:Plan' ])
#
#
# entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ])
# entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ])
# entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ])
#
#
# wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018)
#
#
# activity(ex:act1,-,-,[prov:type="publish"])
# activity(ex:act2,-,-,[prov:type="publish"])
#
# wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -)
# wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
#
# used(ex:act1, chairs:2011OctDec/0004, -)
# used(ex:act1, email:2011Oct/0141, -)
# used(ex:act2, email:2011Dec/0111, -)
#
# agent(w3:Consortium, [ prov:type='prov:Organization' ])
#
# wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance)
# wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance)
#
# endBundle
#===========================================================================
g = ProvDocument()
g.add_namespace('ex', 'http://example.org/')
g.add_namespace('w3', 'http://www.w3.org/')
g.add_namespace('tr', 'http://www.w3.org/TR/2011/')
g.add_namespace('process',
'http://www.w3.org/2005/10/Process-20051014/tr.html#')
g.add_namespace('email',
'https://lists.w3.org/Archives/Member/w3c-archive/')
g.add_namespace('chairs', 'https://lists.w3.org/Archives/Member/chairs/')
g.add_namespace('trans', 'http://www.w3.org/2005/08/01-transitions.html#')
g.add_namespace('rec54', 'http://www.w3.org/2001/02pd/rec54#')
g.entity('tr:WD-prov-dm-20111018', {'prov:type': 'rec54:WD'})
g.entity('tr:WD-prov-dm-20111215', {'prov:type': 'rec54:WD'})
g.entity('process:rec-advance', {'prov:type': 'prov:Plan'})
g.entity('chairs:2011OctDec/0004', {'prov:type': 'trans:transreq'})
g.entity('email:2011Oct/0141', {'prov:type': 'trans:pubreq'})
g.entity('email:2011Dec/0111', {'prov:type': 'trans:pubreq'})
g.wasDerivedFrom('tr:WD-prov-dm-20111215', 'tr:WD-prov-dm-20111018')
g.activity('ex:act1', other_attributes={'prov:type': "publish"})
g.activity('ex:act2', other_attributes={'prov:type': "publish"})
g.wasGeneratedBy('tr:WD-prov-dm-20111018', 'ex:act1')
g.wasGeneratedBy('tr:WD-prov-dm-20111215', 'ex:act2')
g.used('ex:act1', 'chairs:2011OctDec/0004')
g.used('ex:act1', 'email:2011Oct/0141')
g.used('ex:act2', 'email:2011Dec/0111')
g.agent('w3:Consortium', other_attributes={'prov:type': "Organization"})
g.wasAssociatedWith('ex:act1', 'w3:Consortium', 'process:rec-advance')
g.wasAssociatedWith('ex:act2', 'w3:Consortium', 'process:rec-advance')
return g
"Annotated Commit Version",
other_attributes={"prov:type": "commit_resource_version"},
)
com.wasAssociatedWith("Commit Creation", "Creator")
com.wasAttributedTo("Commit", "Creator")
com.wasAttributedTo("Commit Version", "Creator")
com.wasGeneratedBy("Commit", "Commit Creation")
com.wasGeneratedBy("Commit Version", "Commit Creation")
com.wasAttributedTo("Annotated Commit Version", "Annotator")
com.wasAssociatedWith("Commit Annotation", "Annotator")
com.used("Commit Annotation", "Commit Version")
com.wasInformedBy("Commit Annotation", "Commit Creation")
com.wasGeneratedBy("Annotated Commit Version", "Commit Annotation")
com.specializationOf("Commit Version", "Commit")
com.specializationOf("Annotated Commit Version", "Commit")
com.wasDerivedFrom("Annotated Commit Version", "Commit Version")
mr = ProvDocument()
mr.set_default_namespace("gitlab2prov:")
mr.agent(
"Creator",
other_attributes={
"prov:type": "user",
"prov:role": "creator",
"name": ""
},
)
mr.agent("Annotator",
other_attributes={
"prov:type": "user",
"prov:role": "initiator",
