Ejemplo n.º 1
0
def fetch_ensembl_release(path=None, release='75'):
    """Get pyensembl genome files"""

    from pyensembl import Genome, EnsemblRelease
    #this call should download the files
    genome = EnsemblRelease(release, species='human')
    genome.download(overwrite=False)
    genome.index(overwrite=False)
    genome.cache_directory_path = path
    print('pyensembl genome files cached in %s' % genome.cache_directory_path)
    #run_pyensembl_install()
    return