def compute_search_efficiency_in_bins(found, total, ndbins, sim_to_bins_function = lambda sim: (sim.distance,)):
"""
This program creates the search efficiency in the provided ndbins. The
first dimension of ndbins must be the distance. You also must provide a
function that maps a sim inspiral row to the correct tuple to index the ndbins.
"""
input = rate.BinnedRatios(ndbins)
# increment the numerator with the missed injections
[input.incnumerator(sim_to_bins_function(sim)) for sim in found]
# increment the denominator with the total injections
[input.incdenominator(sim_to_bins_function(sim)) for sim in total]
# regularize by setting denoms to 1 to avoid nans
input.regularize()
# pull out the efficiency array, it is the ratio
eff = rate.BinnedArray(rate.NDBins(ndbins), array = input.ratio())
# compute binomial uncertainties in each bin
err_arr = numpy.sqrt(eff.array * (1-eff.array)/input.denominator.array)
err = rate.BinnedArray(rate.NDBins(ndbins), array = err_arr)
return eff, err
def __init__(self, x, y, magnitude, max_magnitude):
self.fig, self.axes = SnglBurstUtils.make_burst_plot("X", "Y")
self.fig.set_size_inches(6, 6)
self.x = x
self.y = y
self.magnitude = magnitude
self.n_foreground = 0
self.n_background = 0
self.n_injections = 0
max_magnitude = math.log10(max_magnitude)
self.foreground_bins = rate.BinnedArray(
rate.NDBins((rate.LinearBins(-max_magnitude, max_magnitude, 1024),
rate.LinearBins(-max_magnitude, max_magnitude,
1024))))
self.background_bins = rate.BinnedArray(
rate.NDBins((rate.LinearBins(-max_magnitude, max_magnitude, 1024),
rate.LinearBins(-max_magnitude, max_magnitude,
1024))))
self.coinc_injection_bins = rate.BinnedArray(
rate.NDBins((rate.LinearBins(-max_magnitude, max_magnitude, 1024),
rate.LinearBins(-max_magnitude, max_magnitude,
1024))))
self.incomplete_coinc_injection_bins = rate.BinnedArray(
rate.NDBins((rate.LinearBins(-max_magnitude, max_magnitude, 1024),
rate.LinearBins(-max_magnitude, max_magnitude,
1024))))
def __init__(self, x_instrument, y_instrument, magnitude, desc,
min_magnitude, max_magnitude):
self.fig, self.axes = SnglBurstUtils.make_burst_plot(
"%s %s" % (x_instrument, desc), "%s %s" % (y_instrument, desc))
self.fig.set_size_inches(6, 6)
self.axes.loglog()
self.x_instrument = x_instrument
self.y_instrument = y_instrument
self.magnitude = magnitude
self.foreground_x = []
self.foreground_y = []
self.n_foreground = 0
self.n_background = 0
self.n_injections = 0
self.foreground_bins = rate.BinnedArray(
rate.NDBins(
(rate.LogarithmicBins(min_magnitude, max_magnitude, 1024),
rate.LogarithmicBins(min_magnitude, max_magnitude, 1024))))
self.background_bins = rate.BinnedArray(
rate.NDBins(
(rate.LogarithmicBins(min_magnitude, max_magnitude, 1024),
rate.LogarithmicBins(min_magnitude, max_magnitude, 1024))))
self.coinc_injection_bins = rate.BinnedArray(
rate.NDBins(
(rate.LogarithmicBins(min_magnitude, max_magnitude, 1024),
rate.LogarithmicBins(min_magnitude, max_magnitude, 1024))))
self.incomplete_coinc_injection_bins = rate.BinnedArray(
rate.NDBins(
(rate.LogarithmicBins(min_magnitude, max_magnitude, 1024),
rate.LogarithmicBins(min_magnitude, max_magnitude, 1024))))
def __init__(self, instruments):
self.densities = {}
for instrument in instruments:
self.densities["%s_snr2_chi2" % instrument] = rate.BinnedLnPDF(rate.NDBins((rate.ATanLogarithmicBins(10, 1e7, 801), rate.ATanLogarithmicBins(.1, 1e4, 801))))
for pair in itertools.combinations(sorted(instruments), 2):
dt = 0.005 + snglcoinc.light_travel_time(instrument1, instrument2) # seconds
self.densities["%s_%s_dt" % pair] = rate.BinnedLnPDF(rate.NDBins((rate.ATanBins(-dt, +dt, 801),)))
self.densities["%s_%s_dA" % pair] = rate.BinnedLnPDF(rate.NDBins((rate.ATanBins(-0.5, +0.5, 801),)))
self.densities["%s_%s_df" % pair] = rate.BinnedLnPDF(rate.NDBins((rate.ATanBins(-0.2, +0.2, 501),)))
# only non-negative rss timing residual bins will be used
# but we want a binning that's linear at the origin so
# instead of inventing a new one we just use atan bins that
# are symmetric about 0
self.densities["instrumentgroup,rss_timing_residual"] = rate.BinnedLnPDF(rate.NDBins((snglcoinc.InstrumentBins(names = instruments), rate.ATanBins(-0.02, +0.02, 1001))))
def dt_binning(instrument1, instrument2):
# FIXME: hard-coded for directional search
#dt = 0.02 + inject.light_travel_time(instrument1, instrument2)
dt = 0.02
return rate.NDBins(
(rate.ATanBins(-dt, +dt, 12001), rate.LinearBins(0.0, 2 * math.pi,
61)))
def _bin_events(self, binning = None):
# called internally by finish()
if binning is None:
minx, maxx = min(self.injected_x), max(self.injected_x)
miny, maxy = min(self.injected_y), max(self.injected_y)
binning = rate.NDBins((rate.LogarithmicBins(minx, maxx, 256), rate.LogarithmicBins(miny, maxy, 256)))
self.efficiency = rate.BinnedRatios(binning)
for xy in zip(self.injected_x, self.injected_y):
self.efficiency.incdenominator(xy)
for xy in zip(self.found_x, self.found_y):
self.efficiency.incnumerator(xy)
# 1 / error^2 is the number of injections that need to be
# within the window in order for the fractional uncertainty
# in that number to be = error. multiplying by
# bins_per_inj tells us how many bins the window needs to
# cover, and taking the square root translates that into
# the window's length on a side in bins. because the
# contours tend to run parallel to the x axis, the window
# is dilated in that direction to improve resolution.
bins_per_inj = self.efficiency.used() / float(len(self.injected_x))
self.window_size_x = self.window_size_y = math.sqrt(bins_per_inj / self.error**2)
self.window_size_x *= math.sqrt(2)
self.window_size_y /= math.sqrt(2)
if self.window_size_x > 100 or self.window_size_y > 100:
# program will take too long to run
raise ValueError("smoothing filter too large (not enough injections)")
print >>sys.stderr, "The smoothing window for %s is %g x %g bins" % ("+".join(self.instruments), self.window_size_x, self.window_size_y),
print >>sys.stderr, "which is %g%% x %g%% of the binning" % (100.0 * self.window_size_x / binning[0].n, 100.0 * self.window_size_y / binning[1].n)
def volume_binned_pylal(f_dist, m_dist, bins=15):
""" Compute the sensitive volume using a distanced
binned efficiency estimate
Parameters
-----------
found_distance: numpy.ndarray
The distances of found injections
missed_dsistance: numpy.ndarray
The distances of missed injections
Returns
--------
volume: float
Volume estimate
volume_error: float
The standared error in the volume
"""
def sims_to_bin(sim):
return (sim, 0)
from pylal import rate
from pylal.imr_utils import compute_search_volume_in_bins, compute_search_efficiency_in_bins
found = f_dist
total = numpy.concatenate([f_dist, m_dist])
ndbins = rate.NDBins([
rate.LinearBins(min(total), max(total), bins),
rate.LinearBins(0., 1, 1)
])
vol, verr = compute_search_volume_in_bins(found, total, ndbins,
sims_to_bin)
return vol.array[0], verr.array[0]
def get_2d_mass_bins(self, low, high, bins): """ Given the component mass range low, high of the search it will return 2D bins with size bins in each direction """ mass1Bin = rate.LinearBins(low,high,bins) mass2Bin = rate.LinearBins(low,high,bins) twoDMB=rate.NDBins( (mass1Bin,mass2Bin) ) return twoDMB
def make_binning(plots): plots = [plot for instrument in plots.keys() for plot in plots[instrument] if isinstance(plot, SimBurstUtils.Efficiency_hrss_vs_freq)] if not plots: return None minx = min([min(plot.injected_x) for plot in plots]) maxx = max([max(plot.injected_x) for plot in plots]) miny = min([min(plot.injected_y) for plot in plots]) maxy = max([max(plot.injected_y) for plot in plots]) return rate.NDBins((rate.LogarithmicBins(minx, maxx, 512), rate.LogarithmicBins(miny, maxy, 512)))
def __init__(self, instrument, interval, width):
self.fig, self.axes = SnglBurstUtils.make_burst_plot(r"$f_{\mathrm{recovered}} / f_{\mathrm{injected}}$", "Event Number Density")
self.axes.loglog()
self.instrument = instrument
self.found = 0
# 21 bins per filter width
bins = int(float(abs(interval)) / width) * 21
binning = rate.NDBins((rate.LinearBins(interval[0], interval[1], bins),))
self.offsets = rate.BinnedArray(binning)
self.coinc_offsets = rate.BinnedArray(binning)
def __init__(self, instrument, interval, width):
self.fig, self.axes = SnglBurstUtils.make_burst_plot(r"$t_{\mathrm{recovered}} - t_{\mathrm{injected}}$ (s)", "Triggers per Unit Offset")
self.axes.semilogy()
self.instrument = instrument
self.found = 0
# 21 bins per filter width
bins = int(float(abs(interval)) / width) * 21
binning = rate.NDBins((rate.LinearBins(interval[0], interval[1], bins),))
self.offsets = rate.BinnedArray(binning)
self.coinc_offsets = rate.BinnedArray(binning)
def guess_nd_bins(sims, bin_dict={"distance": (200, rate.LinearBins)}):
"""
Given a dictionary of bin counts and bin objects keyed by sim
attribute, come up with a sensible NDBins scheme
"""
return rate.NDBins([
bintup[1](min([getattr(sim, attr) for sim in sims]),
max([getattr(sim, attr)
for sim in sims]) + sys.float_info.min, bintup[0])
for attr, bintup in bin_dict.items()
])
def guess_distance_chirp_mass_bins_from_sims(sims, mbins = 11, distbins = 200): """ Given a list of the injections, guess at the chirp mass and distance bins. """ dist_mchirp_vals = map(sim_to_distance_chirp_mass_bins_function, sims) distances = [tup[0] for tup in dist_mchirp_vals] mchirps = [tup[1] for tup in dist_mchirp_vals] return rate.NDBins([rate.LinearBins(min(distances), max(distances), distbins), rate.LinearBins(min(mchirps), max(mchirps), mbins)])
def guess_distance_effective_spin_parameter_bins_from_sims(sims, chibins = 11, distbins = 200): """ Given a list of the injections, guess at the chi = (m1*s1z + m2*s2z)/(m1+m2) and distance bins. """ dist_chi_vals = map(sim_to_distance_effective_spin_parameter_bins_function, sims) distances = [tup[0] for tup in dist_chi_vals] chis = [tup[1] for tup in dist_chi_vals] return rate.NDBins([rate.LinearBins(min(distances), max(distances), distbins), rate.LinearBins(min(chis), max(chis), chibins)])
def add_contents(self, contents):
if self.tisi_rows is None:
# get a list of time slide dictionaries
self.tisi_rows = contents.time_slide_table.as_dict().values()
# find the largest and smallest offsets
min_offset = min(offset for vector in self.tisi_rows
for offset in vector.values())
max_offset = max(offset for vector in self.tisi_rows
for offset in vector.values())
# a guess at the time slide spacing: works if the
# time slides are distributed as a square grid over
# the plot area. (max - min)^2 gives the area of
# the time slide square in square seconds; dividing
# by the length of the time slide list gives the
# average area per time slide; taking the square
# root of that gives the average distance between
# adjacent time slides in seconds
time_slide_spacing = ((max_offset - min_offset)**2 /
len(self.tisi_rows))**0.5
# use an average of 3 bins per time slide in each
# direction, but round to an odd integer
nbins = math.ceil(
(max_offset - min_offset) / time_slide_spacing * 3)
# construct the binning
self.bins = rate.BinnedRatios(
rate.NDBins((rate.LinearBins(min_offset, max_offset, nbins),
rate.LinearBins(min_offset, max_offset, nbins))))
self.seglists |= contents.seglists
for offsets in contents.connection.cursor().execute(
"""
SELECT tx.offset, ty.offset FROM
coinc_event
JOIN time_slide AS tx ON (
tx.time_slide_id == coinc_event.time_slide_id
)
JOIN time_slide AS ty ON (
ty.time_slide_id == coinc_event.time_slide_id
)
WHERE
coinc_event.coinc_def_id == ?
AND tx.instrument == ?
AND ty.instrument == ?
""", (contents.bb_definer_id, self.x_instrument, self.y_instrument)):
try:
self.bins.incnumerator(offsets)
except IndexError:
# beyond plot boundaries
pass
def __init__(self, ifo, interval, width):
self.fig, self.axes = SnglBurstUtils.make_burst_plot(
"Peak Frequency (Hz)",
"Trigger Rate Spectral Density (triggers / s / Hz)")
self.ifo = ifo
self.nevents = 0
# 21 bins per filter width
bins = int(float(abs(interval)) / width) * 21
binning = rate.NDBins((rate.LinearBins(interval[0], interval[1],
bins), ))
self.rate = rate.BinnedDensity(binning)
def __init__(self, instruments):
self.densities = {}
for pair in intertools.combinations(sorted(instruments), 2):
# FIXME: hard-coded for directional search
#dt = 0.02 + snglcoinc.light_travel_time(*pair)
dt = 0.02
self.densities["%s_%s_dt" % pair] = rate.BinnedLnDPF(
rate.NDBins((rate.ATanBins(-dt, +dt, 12001),
rate.LinearBins(0.0, 2 * math.pi, 61))))
self.densities["%s_%s_dband" % pair] = rate.BinnedLnDPF(
rate.NDBins((rate.LinearBins(-2.0, +2.0, 12001),
rate.LinearBins(0.0, 2 * math.pi, 61))))
self.densities["%s_%s_ddur" % pair] = rate.BinnedLnDPF(
rate.NDBins((rate.LinearBins(-2.0, +2.0, 12001),
rate.LinearBins(0.0, 2 * math.pi, 61))))
self.densities["%s_%s_df" % pair] = rate.BinnedLnDPF(
rate.NDBins((rate.LinearBins(-2.0, +2.0, 12001),
rate.LinearBins(0.0, 2 * math.pi, 61))))
self.densities["%s_%s_dh" % pair] = rate.BinnedLnDPF(
rate.NDBins((rate.LinearBins(-2.0, +2.0, 12001),
rate.LinearBins(0.0, 2 * math.pi, 61))))
def guess_distance_total_mass_bins_from_sims(sims, nbins = 11, distbins = 200):
"""
Given a list of the injections, guess at the mass1, mass2 and distance
bins. Floor and ceil will be used to round down to the nearest integers.
"""
total_lo = numpy.floor(min([sim.mass1 + sim.mass2 for sim in sims]))
total_hi = numpy.ceil(max([sim.mass1 + sim.mass2 for sim in sims]))
mindist = numpy.floor(min([sim.distance for sim in sims]))
maxdist = numpy.ceil(max([sim.distance for sim in sims]))
return rate.NDBins((rate.LinearBins(mindist, maxdist, distbins), rate.LinearBins(total_lo, total_hi, nbins)))
def __init__(self, ifo, width, max):
self.fig, self.axes = SnglBurstUtils.make_burst_plot(
"Delay (s)", "Count / Delay")
self.ifo = ifo
self.nevents = 0
# 21 bins per filter width
interval = segments.segment(0, max + 2)
self.bins = rate.BinnedDensity(
rate.NDBins(
(rate.LinearBins(interval[0], interval[1],
int(float(abs(interval)) / width) * 21), )))
self.axes.semilogy()
def compute_search_efficiency_in_bins(found,
total,
ndbins,
sim_to_bins_function=lambda sim:
(sim.distance, )):
"""
This program creates the search efficiency in the provided ndbins. The
first dimension of ndbins must be the distance. You also must provide a
function that maps a sim inspiral row to the correct tuple to index the ndbins.
"""
input = rate.BinnedRatios(ndbins)
# increment the numerator with the missed injections
[input.incnumerator(sim_to_bins_function(sim)) for sim in found]
# increment the denominator with the total injections
[input.incdenominator(sim_to_bins_function(sim)) for sim in total]
# regularize by setting empty bins to zero efficiency
input.denominator.array[input.numerator.array < 1] = 1e35
# pull out the efficiency array, it is the ratio
eff = rate.BinnedArray(rate.NDBins(ndbins), array=input.ratio())
# compute binomial uncertainties in each bin
k = input.numerator.array
N = input.denominator.array
eff_lo_arr = (N * (2 * k + 1) - numpy.sqrt(4 * N * k *
(N - k) + N**2)) / (2 * N *
(N + 1))
eff_hi_arr = (N * (2 * k + 1) + numpy.sqrt(4 * N * k *
(N - k) + N**2)) / (2 * N *
(N + 1))
eff_lo = rate.BinnedArray(rate.NDBins(ndbins), array=eff_lo_arr)
eff_hi = rate.BinnedArray(rate.NDBins(ndbins), array=eff_hi_arr)
return eff_lo, eff, eff_hi
def compute_search_volume_in_bins(found, total, ndbins, sim_to_bins_function):
"""
This program creates the search volume in the provided ndbins. The
first dimension of ndbins must be the distance over which to integrate. You
also must provide a function that maps a sim inspiral row to the correct tuple
to index the ndbins.
"""
eff, err = compute_search_efficiency_in_bins(found, total, ndbins, sim_to_bins_function)
dx = ndbins[0].upper() - ndbins[0].lower()
r = ndbins[0].centres()
# we have one less dimension on the output
vol = rate.BinnedArray(rate.NDBins(ndbins[1:]))
errors = rate.BinnedArray(rate.NDBins(ndbins[1:]))
# integrate efficiency to obtain volume
vol.array = numpy.trapz(eff.array.T * 4. * numpy.pi * r**2, r, dx)
# propagate errors in eff to errors in V
errors.array = numpy.sqrt(( (4*numpy.pi *r**2 *err.array.T *dx)**2 ).sum(-1))
return vol, errors
def compute_search_efficiency_in_bins(found, total, ndbins, sim_to_bins_function = lambda sim: (sim.distance,)): """ This program creates the search efficiency in the provided ndbins. The first dimension of ndbins must be the distance. You also must provide a function that maps a sim inspiral row to the correct tuple to index the ndbins. """ num = rate.BinnedArray(ndbins) den = rate.BinnedArray(ndbins) # increment the numerator with the found injections for sim in found: num[sim_to_bins_function(sim)] += 1 # increment the denominator with the total injections for sim in total: den[sim_to_bins_function(sim)] += 1 # sanity check assert (num.array <= den.array).all(), "some bins have more found injections than were made" # regularize by setting empty bins to zero efficiency den.array[numpy.logical_and(num.array == 0, den.array == 0)] = 1 # pull out the efficiency array, it is the ratio eff = rate.BinnedArray(rate.NDBins(ndbins), array = num.array / den.array) # compute binomial uncertainties in each bin k = num.array N = den.array eff_lo_arr = ( N*(2*k + 1) - numpy.sqrt(4*N*k*(N - k) + N**2) ) / (2*N*(N + 1)) eff_hi_arr = ( N*(2*k + 1) + numpy.sqrt(4*N*k*(N - k) + N**2) ) / (2*N*(N + 1)) eff_lo = rate.BinnedArray(rate.NDBins(ndbins), array = eff_lo_arr) eff_hi = rate.BinnedArray(rate.NDBins(ndbins), array = eff_hi_arr) return eff_lo, eff, eff_hi
def compute_search_volume(eff): """ Integrate efficiency to get search volume. """ # get distance bins ndbins = eff.bins dx = ndbins[0].upper() - ndbins[0].lower() r = ndbins[0].centres() # we have one less dimension on the output vol = rate.BinnedArray(rate.NDBins(ndbins[1:])) # integrate efficiency to obtain volume vol.array = numpy.trapz(eff.array.T * 4. * numpy.pi * r**2, r, dx) return vol
class CoincParamsDistributions(ligolw_burca_tailor.BurcaCoincParamsDistributions):
binnings = {
"H1_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),)),
"H2_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),)),
"L1_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),)),
"H1H2_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),)),
"H1L1_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),)),
"H2L1_eff_snr": rate.NDBins((rate.LinearBins(0.0, 50.0, 1000),))
}
filters = {
"H1_eff_snr": rate.gaussian_window(21),
"H2_eff_snr": rate.gaussian_window(21),
"L1_eff_snr": rate.gaussian_window(21),
"H1H2_eff_snr": rate.gaussian_window(21),
"H1L1_eff_snr": rate.gaussian_window(21),
"H2L1_eff_snr": rate.gaussian_window(21)
}
def dt_binning(instrument1, instrument2):
dt = 0.005 + snglcoinc.light_travel_time(instrument1,
instrument2) # seconds
return rate.NDBins((rate.ATanBins(-dt, +dt, 801), ))
class StringCoincParamsDistributions(snglcoinc.CoincParamsDistributions):
ligo_lw_name_suffix = u"stringcusp_coincparamsdistributions"
binnings = {
"H1_snr2_chi2":
rate.NDBins((rate.ATanLogarithmicBins(10, 1e7, 801),
rate.ATanLogarithmicBins(.1, 1e4, 801))),
"H2_snr2_chi2":
rate.NDBins((rate.ATanLogarithmicBins(10, 1e7, 801),
rate.ATanLogarithmicBins(.1, 1e4, 801))),
"L1_snr2_chi2":
rate.NDBins((rate.ATanLogarithmicBins(10, 1e7, 801),
rate.ATanLogarithmicBins(.1, 1e4, 801))),
"V1_snr2_chi2":
rate.NDBins((rate.ATanLogarithmicBins(10, 1e7, 801),
rate.ATanLogarithmicBins(.1, 1e4, 801))),
"H1_H2_dt":
dt_binning("H1", "H2"),
"H1_L1_dt":
dt_binning("H1", "L1"),
"H1_V1_dt":
dt_binning("H1", "V1"),
"H2_L1_dt":
dt_binning("H2", "L1"),
"H2_V1_dt":
dt_binning("H2", "V1"),
"L1_V1_dt":
dt_binning("L1", "V1"),
"H1_H2_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"H1_L1_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"H1_V1_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"H2_L1_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"H2_V1_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"L1_V1_dA":
rate.NDBins((rate.ATanBins(-0.5, +0.5, 801), )),
"H1_H2_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
"H1_L1_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
"H1_V1_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
"H2_L1_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
"H2_V1_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
"L1_V1_df":
rate.NDBins((rate.ATanBins(-0.2, +0.2, 501), )),
# only non-negative rss timing residual bins will be used
# but we want a binning that's linear at the origin so
# instead of inventing a new one we just use atan bins that
# are symmetric about 0
"instrumentgroup,rss_timing_residual":
rate.NDBins((snglcoinc.InstrumentBins(names=("H1", "H2", "L1", "V1")),
rate.ATanBins(-0.02, +0.02, 1001)))
}
filters = {
"H1_snr2_chi2":
rate.gaussian_window(11, 11, sigma=20),
"H2_snr2_chi2":
rate.gaussian_window(11, 11, sigma=20),
"L1_snr2_chi2":
rate.gaussian_window(11, 11, sigma=20),
"V1_snr2_chi2":
rate.gaussian_window(11, 11, sigma=20),
"H1_H2_dt":
rate.gaussian_window(11, sigma=20),
"H1_L1_dt":
rate.gaussian_window(11, sigma=20),
"H1_V1_dt":
rate.gaussian_window(11, sigma=20),
"H2_L1_dt":
rate.gaussian_window(11, sigma=20),
"H2_V1_dt":
rate.gaussian_window(11, sigma=20),
"L1_V1_dt":
rate.gaussian_window(11, sigma=20),
"H1_H2_dA":
rate.gaussian_window(11, sigma=20),
"H1_L1_dA":
rate.gaussian_window(11, sigma=20),
"H1_V1_dA":
rate.gaussian_window(11, sigma=20),
"H2_L1_dA":
rate.gaussian_window(11, sigma=20),
"H2_V1_dA":
rate.gaussian_window(11, sigma=20),
"L1_V1_dA":
rate.gaussian_window(11, sigma=20),
"H1_H2_df":
rate.gaussian_window(11, sigma=20),
"H1_L1_df":
rate.gaussian_window(11, sigma=20),
"H1_V1_df":
rate.gaussian_window(11, sigma=20),
"H2_L1_df":
rate.gaussian_window(11, sigma=20),
"H2_V1_df":
rate.gaussian_window(11, sigma=20),
"L1_V1_df":
rate.gaussian_window(11, sigma=20),
# instrument group filter is a no-op, should produce a
# 1-bin top-hat window.
"instrumentgroup,rss_timing_residual":
rate.gaussian_window(1e-100, 11, sigma=20)
}
@staticmethod
def coinc_params(events, offsetvector, triangulators):
#
# check for coincs that have been vetoed entirely
#
if len(events) < 2:
return None
#
# Initialize the parameter dictionary, sort the events by
# instrument name (the multi-instrument parameters are defined for
# the instruments in this order and the triangulators are
# constructed this way too), and retrieve the sorted instrument
# names
#
params = {}
events = tuple(sorted(events, key=lambda event: event.ifo))
instruments = tuple(event.ifo for event in events)
#
# zero-instrument parameters
#
ignored, ignored, ignored, rss_timing_residual = triangulators[
instruments](tuple(event.peak + offsetvector[event.ifo]
for event in events))
# FIXME: rss_timing_residual is forced to 0 to disable this
# feature. all the code to compute it properly is still here and
# given suitable initializations, the distribution data is still
# two-dimensional and has a suitable filter applied to it, but all
# events are forced into the RSS_{\Delta t} = 0 bin, in effect
# removing that dimension from the data. We can look at this again
# sometime in the future if we're curious why it didn't help. Just
# delete the next line and you're back in business.
rss_timing_residual = 0.0
params["instrumentgroup,rss_timing_residual"] = (
frozenset(instruments), rss_timing_residual)
#
# one-instrument parameters
#
for event in events:
prefix = "%s_" % event.ifo
params["%ssnr2_chi2" % prefix] = (event.snr**2.0,
event.chisq / event.chisq_dof)
#
# two-instrument parameters. note that events are sorted by
# instrument
#
for event1, event2 in iterutils.choices(events, 2):
assert event1.ifo != event2.ifo
prefix = "%s_%s_" % (event1.ifo, event2.ifo)
dt = float((event1.peak + offsetvector[event1.ifo]) -
(event2.peak + offsetvector[event2.ifo]))
params["%sdt" % prefix] = (dt, )
dA = math.log10(abs(event1.amplitude / event2.amplitude))
params["%sdA" % prefix] = (dA, )
# f_cut = central_freq + bandwidth/2
f_cut1 = event1.central_freq + event1.bandwidth / 2
f_cut2 = event2.central_freq + event2.bandwidth / 2
df = float((math.log10(f_cut1) - math.log10(f_cut2)) /
(math.log10(f_cut1) + math.log10(f_cut2)))
params["%sdf" % prefix] = (df, )
#
# done
#
return params
def add_slidelessbackground(self,
database,
experiments,
param_func_args=()):
# FIXME: this needs to be taught how to not slide H1 and
# H2 with respect to each other
# segment lists
seglists = database.seglists - database.vetoseglists
# construct the event list dictionary. remove vetoed
# events from the lists and save event peak times so they
# can be restored later
eventlists = {}
orig_peak_times = {}
for event in database.sngl_burst_table:
if event.peak in seglists[event.ifo]:
try:
eventlists[event.ifo].append(event)
except KeyError:
eventlists[event.ifo] = [event]
orig_peak_times[event] = event.peak
# parse the --thresholds H1,L1=... command-line options from burca
delta_t = [
float(threshold.split("=")[-1])
for threshold in ligolw_process.get_process_params(
database.xmldoc, "ligolw_burca", "--thresholds")
]
if not all(delta_t[0] == threshold for threshold in delta_t[1:]):
raise ValueError(
"\Delta t is not unique in ligolw_burca arguments")
delta_t = delta_t.pop()
# construct the coinc generator. note that H1+H2-only
# coincs are forbidden, which is affected here by removing
# that instrument combination from the object's internal
# .rates dictionary
coinc_generator = snglcoinc.CoincSynthesizer(eventlists, seglists,
delta_t)
if frozenset(("H1", "H2")) in coinc_generator.rates:
del coinc_generator.rates[frozenset(("H1", "H2"))]
# build a dictionary of time-of-arrival generators
toa_generator = dict(
(instruments, coinc_generator.plausible_toas(instruments))
for instruments in coinc_generator.rates.keys())
# how many coincs? the expected number is obtained by
# multiplying the total zero-lag time for which at least
# two instruments were on by the sum of the rates for all
# coincs to get the mean number of coincs per zero-lag
# observation time, and multiplying that by the number of
# experiments the background should simulate to get the
# mean number of background events to simulate. the actual
# number simulated is a Poisson-distributed RV with that
# mean.
n_coincs, = scipy.stats.poisson.rvs(
float(abs(segmentsUtils.vote(seglists.values(), 2))) *
sum(coinc_generator.rates.values()) * experiments)
# generate synthetic background coincs
zero_lag_offset_vector = offsetvector(
(instrument, 0.0) for instrument in seglists)
for n, events in enumerate(
coinc_generator.coincs(lsctables.SnglBurst.get_peak)):
# n = 1 on 2nd iteration, so placing this condition
# where it is in the loop causes the correct number
# of events to be added to the background
if n >= n_coincs:
break
# assign fake peak times
toas = toa_generator[frozenset(event.ifo
for event in events)].next()
for event in events:
event.peak = toas[event.ifo]
# compute coincidence parameters
self.add_background(
self.coinc_params(events, zero_lag_offset_vector,
*param_func_args))
# restore original peak times
for event, peak_time in orig_peak_times.iteritems():
event.peak = peak_time
def finish(self, threshold):
# bin the injections
self._bin_events()
# use the same binning for the found injection density as
# was constructed for the efficiency
self.found_density = rate.BinnedArray(self.efficiency.denominator.bins)
# construct the amplitude weighting function
amplitude_weight = rate.BinnedArray(rate.NDBins((rate.LinearBins(threshold - 100, threshold + 100, 10001),)))
# gaussian window's width is the number of bins
# corresponding to 10 units of amplitude, which is computed
# by dividing 10 by the "volume" of the bin corresponding
# to threshold. index is the index of the element in
# amplitude_weight corresponding to the threshold.
index, = amplitude_weight.bins[threshold,]
window = rate.gaussian_window(10.0 / amplitude_weight.bins.volumes()[index])
window /= 10 * window[(len(window) - 1) / 2]
# set the window data into the BinnedArray object. the
# Gaussian peaks on the middle element of the window, which
# we want to place at index in the amplitude_weight array.
lo = index - (len(window) - 1) / 2
hi = lo + len(window)
if lo < 0 or hi > len(amplitude_weight.array):
raise ValueError("amplitude weighting window too large")
amplitude_weight.array[lo:hi] = window
# store the recovered injections in the found density bins
# weighted by amplitude
for x, y, z in self.recovered_xyz:
try:
weight = amplitude_weight[z,]
except IndexError:
# beyond the edge of the window
weight = 0.0
self.found_density[x, y] += weight
# the efficiency is only valid up to the highest energy
# that has been injected. this creates problems later on
# so, instead, for each frequency, identify the highest
# energy that has been measured and copy the values for
# that bin's numerator and denominator into the bins for
# all higher energies. do the same for the counts in the
# found injection density bins.
#
# numpy.indices() returns two arrays array, the first of
# which has each element set equal to its x index, the
# second has each element set equal to its y index, we keep
# the latter. meanwhile numpy.roll() cyclically permutes
# the efficiency bins down one along the y (energy) axis.
# from this, the conditional finds bins where the
# efficiency is greater than 0.9 but <= 0.9 in the bin
# immediately above it in energy. we select the elements
# from the y index array where the conditional is true, and
# then use numpy.max() along the y direction to return the
# highest such y index for each x index, which is a 1-D
# array. finally, enumerate() is used to iterate over x
# index and corresponding y index, and if the y index is
# not negative (was found) the value from that x-y bin is
# copied to all higher bins.
n = self.efficiency.numerator.array
d = self.efficiency.denominator.array
f = self.found_density.array
bady = -1
for x, y in enumerate(numpy.max(numpy.where((d > 0) & (numpy.roll(d, -1, axis = 1) <= 0), numpy.indices(d.shape)[1], bady), axis = 1)):
if y != bady:
n[x, y + 1:] = n[x, y]
d[x, y + 1:] = d[x, y]
f[x, y + 1:] = f[x, y]
# now do the same for the bins at energies below those that
# have been measured.
bady = d.shape[1]
for x, y in enumerate(numpy.min(numpy.where((d > 0) & (numpy.roll(d, 1, axis = 1) <= 0), numpy.indices(d.shape)[1], bady), axis = 1)):
if y != bady:
n[x, 0:y] = n[x, y]
d[x, 0:y] = d[x, y]
f[x, 0:y] = f[x, y]
diagnostic_plot(self.efficiency.numerator.array, self.efficiency.denominator.bins, r"Efficiency Numerator (Before Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_efficiency_numerator_before.png")
diagnostic_plot(self.efficiency.denominator.array, self.efficiency.denominator.bins, r"Efficiency Denominator (Before Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_efficiency_denominator_before.png")
diagnostic_plot(self.found_density.array, self.efficiency.denominator.bins, r"Injections Lost / Unit of Threshold (Before Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_found_density_before.png")
# smooth the efficiency bins and the found injection
# density bins using the same 2D window.
window = rate.gaussian_window(self.window_size_x, self.window_size_y)
window /= window[tuple((numpy.array(window.shape, dtype = "double") - 1) / 2)]
rate.filter_binned_ratios(self.efficiency, window)
rate.filter_array(self.found_density.array, window)
diagnostic_plot(self.efficiency.numerator.array, self.efficiency.denominator.bins, r"Efficiency Numerator (After Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_efficiency_numerator_after.png")
diagnostic_plot(self.efficiency.denominator.array, self.efficiency.denominator.bins, r"Efficiency Denominator (After Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_efficiency_denominator_after.png")
diagnostic_plot(self.found_density.array, self.efficiency.denominator.bins, r"Injections Lost / Unit of Threshold (After Averaging)", self.amplitude_lbl, "lalapps_excesspowerfinal_found_density_after.png")
# compute the uncertainties in the efficiency and its
# derivative by assuming these to be the binomial counting
# fluctuations in the numerators.
p = self.efficiency.ratio()
self.defficiency = numpy.sqrt(p * (1 - p) / self.efficiency.denominator.array)
p = self.found_density.array / self.efficiency.denominator.array
self.dfound_density = numpy.sqrt(p * (1 - p) / self.efficiency.denominator.array)
def __init__(self, interval, width):
# 21 bins per filter width
bins = int(float(abs(interval)) / width) * 21
self.binning = rate.NDBins((rate.LinearBins(interval[0], interval[1],
bins), ))
self.data = {}
options, filenames = parse_command_line() # # ============================================================================= # # Custom SnglBurstTable append() method to put triggers directly into bins # # ============================================================================= # nbins = int(float(abs(options.read_segment)) / options.window) * bins_per_filterwidth binning = rate.NDBins((rate.LinearBins(options.read_segment[0], options.read_segment[1], nbins),)) trigger_rate = rate.BinnedArray(binning) num_triggers = 0 def snglburst_append(self, row, verbose = options.verbose): global num_triggers, rate t = row.peak if t in options.read_segment: trigger_rate[t,] += 1.0 num_triggers += 1 if verbose and not (num_triggers % 125): print >>sys.stderr, "sngl_burst rows read: %d\r" % num_triggers,
class BurcaCoincParamsDistributions(snglcoinc.CoincParamsDistributions):
binnings = {
"H1_H2_dband":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_L1_dband":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H2_L1_dband":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_V1_dband":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"L1_V1_dband":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_H2_ddur":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_L1_ddur":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H2_L1_ddur":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_V1_ddur":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"L1_V1_ddur":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_H2_df":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_L1_df":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H2_L1_df":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_V1_df":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"L1_V1_df":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_H2_dh":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_L1_dh":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H2_L1_dh":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_V1_dh":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"L1_V1_dh":
rate.NDBins(
(rate.LinearBins(-2.0, +2.0,
12001), rate.LinearBins(0.0, 2 * math.pi, 61))),
"H1_H2_dt":
dt_binning("H1", "H2"),
"H1_L1_dt":
dt_binning("H1", "L1"),
"H2_L1_dt":
dt_binning("H2", "L1"),
"H1_V1_dt":
dt_binning("H1", "V1"),
"L1_V1_dt":
dt_binning("L1", "V1")
}
filters = {
"H1_H2_dband": rate.gaussian_window(11, 5),
"H1_L1_dband": rate.gaussian_window(11, 5),
"H2_L1_dband": rate.gaussian_window(11, 5),
"H1_V1_dband": rate.gaussian_window(11, 5),
"L1_V1_dband": rate.gaussian_window(11, 5),
"H1_H2_ddur": rate.gaussian_window(11, 5),
"H1_L1_ddur": rate.gaussian_window(11, 5),
"H2_L1_ddur": rate.gaussian_window(11, 5),
"H1_V1_ddur": rate.gaussian_window(11, 5),
"L1_V1_ddur": rate.gaussian_window(11, 5),
"H1_H2_df": rate.gaussian_window(11, 5),
"H1_L1_df": rate.gaussian_window(11, 5),
"H2_L1_df": rate.gaussian_window(11, 5),
"H1_V1_df": rate.gaussian_window(11, 5),
"L1_V1_df": rate.gaussian_window(11, 5),
"H1_H2_dh": rate.gaussian_window(11, 5),
"H1_V1_df": rate.gaussian_window(11, 5),
"L1_V1_df": rate.gaussian_window(11, 5),
"H1_L1_dh": rate.gaussian_window(11, 5),
"H2_L1_dh": rate.gaussian_window(11, 5),
"H1_H2_dt": rate.gaussian_window(11, 5),
"H1_L1_dt": rate.gaussian_window(11, 5),
"H2_L1_dt": rate.gaussian_window(11, 5),
"H1_V1_dh": rate.gaussian_window(11, 5),
"L2_V1_dh": rate.gaussian_window(11, 5)
}
@classmethod
def from_filenames(cls, filenames, name, verbose=False):
"""
Convenience function to deserialize
CoincParamsDistributions objects from a collection of XML
files and return their sum. The return value is a
two-element tuple. The first element is the deserialized
and summed CoincParamsDistributions object, the second is a
segmentlistdict indicating the interval of time spanned by
the out segments in the search_summary rows matching the
process IDs that were attached to the
CoincParamsDistributions objects in the XML.
"""
self = None
for n, filename in enumerate(filenames, 1):
if verbose:
print >> sys.stderr, "%d/%d:" % (n, len(filenames)),
xmldoc = ligolw_utils.load_filename(
filename, verbose=verbose, contenthandler=cls.contenthandler)
if self is None:
self = cls.from_xml(xmldoc, name)
seglists = lsctables.SearchSummaryTable.get_table(
xmldoc).get_out_segmentlistdict(set([self.process_id
])).coalesce()
else:
other = cls.from_xml(xmldoc, name)
self += other
seglists |= lsctables.SearchSummaryTable.get_table(
xmldoc).get_out_segmentlistdict(set([other.process_id
])).coalesce()
del other
xmldoc.unlink()
return self, seglists