def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
unittest_glob = opts.unittest_glob
temp_filepath = opts.temp_filepath
script_usage_tests = opts.script_usage_tests
suppress_unit_tests = opts.suppress_unit_tests
suppress_script_usage_tests = opts.suppress_script_usage_tests
# since the test data is in the tests folder just add scripts_test_data
emperor_test_data_dir = join(abspath(dirname(__file__)),
'scripts_test_data/')
# offer the option for the user to pass the scripts dir from the command
# line since there is no other way to get the scripts dir. If not provided
# the base structure of the repository will be assumed. Note that for both
# cases we are using absolute paths, to avoid unwanted failures.
if opts.emperor_scripts_dir is None:
emperor_scripts_dir = abspath(
join(get_emperor_project_dir(), 'scripts/'))
# let's try to guess cases for qiime-deploy type of installs
if get_emperor_project_dir().endswith('/lib'):
emperor_scripts_dir = abspath(
join(get_emperor_project_dir()[:-3], 'scripts/'))
else:
emperor_scripts_dir = abspath(opts.emperor_scripts_dir)
# make a sanity check
if (suppress_unit_tests and suppress_script_usage_tests):
option_parser.error("All tests have been suppresed. Nothing to run.")
test_dir = abspath(dirname(__file__))
unittest_good_pattern = re.compile('OK\s*$')
application_not_found_pattern = re.compile('ApplicationNotFoundError')
python_name = 'python'
bad_tests = []
missing_application_tests = []
# Run through all of Emperor's unit tests, and keep track of any files which
# fail unit tests, note that these are the unit tests only
if not suppress_unit_tests:
unittest_names = []
if not unittest_glob:
for root, dirs, files in walk(test_dir):
for name in files:
if name.startswith('test_') and name.endswith('.py'):
unittest_names.append(join(root, name))
else:
for fp in glob(unittest_glob):
fn = split(fp)[1]
if fn.startswith('test_') and fn.endswith('.py'):
unittest_names.append(abspath(fp))
unittest_names.sort()
for unittest_name in unittest_names:
print "Testing %s:\n" % unittest_name
command = '%s %s -v' % (python_name, unittest_name)
stdout, stderr, return_value = qcli_system_call(command)
print stderr
if not unittest_good_pattern.search(stderr):
if application_not_found_pattern.search(stderr):
missing_application_tests.append(unittest_name)
else:
bad_tests.append(unittest_name)
script_usage_failures = 0
# choose to run some of the script usage tests or all the available ones
if not suppress_script_usage_tests and exists(emperor_test_data_dir) and\
exists(emperor_scripts_dir):
if script_usage_tests != None:
script_tests = script_usage_tests.split(',')
else:
script_tests = None
# Run the script usage testing functionality; note that depending on the
# module where this was imported, the name of the arguments will change
# that's the reason why I added the name of the arguments in here
script_usage_result_summary, script_usage_failures = \
run_script_usage_tests( emperor_test_data_dir, # test_data_dir
emperor_scripts_dir, # scripts_dir
temp_filepath, # working_dir
True, # verbose
script_tests, # tests
None, # failure_log_fp
False) # force_overwrite
print "==============\nResult summary\n=============="
if not suppress_unit_tests:
print "\nUnit test result summary\n------------------------\n"
if bad_tests:
print "\nFailed the following unit tests.\n%s" % '\n'.join(
bad_tests)
if missing_application_tests:
print "\nFailed the following unit tests, in part or whole due "+\
"to missing external applications.\nDepending on the Emperor "+\
"features you plan to use, this may not be critical.\n%s"\
% '\n'.join(missing_application_tests)
if not (missing_application_tests or bad_tests):
print "\nAll unit tests passed.\n\n"
if not suppress_script_usage_tests:
if exists(emperor_test_data_dir) and exists(emperor_scripts_dir):
print "\nScript usage test result summary"+\
"\n------------------------------------\n"
print script_usage_result_summary
else:
print(
"\nCould not run script usage tests.\nThe Emperor scripts "
"directory could not be automatically located, try supplying "
" it manually using the --emperor_scripts_dir option.")
# In case there were no failures of any type, exit with a return code of 0
return_code = 1
if (len(bad_tests) == 0 and len(missing_application_tests) == 0
and script_usage_failures == 0):
return_code = 0
return return_code
def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
unittest_glob = opts.unittest_glob
temp_filepath = opts.temp_filepath
script_usage_tests = opts.script_usage_tests
suppress_unit_tests = opts.suppress_unit_tests
suppress_script_usage_tests = opts.suppress_script_usage_tests
suppress_javascript_unit_tests = opts.suppress_javascript_unit_tests
# since the test data is in the tests folder just add scripts_test_data
emperor_test_data_dir = join(abspath(dirname(__file__)),
'scripts_test_data/')
# offer the option for the user to pass the scripts dir from the command
# line since there is no other way to get the scripts dir. If not provided
# the base structure of the repository will be assumed. Note that for both
# cases we are using absolute paths, to avoid unwanted failures.
if opts.emperor_scripts_dir is None:
emperor_scripts_dir = abspath(join(get_emperor_project_dir(),
'scripts/'))
# let's try to guess cases for qiime-deploy type of installs
if get_emperor_project_dir().endswith('/lib'):
emperor_scripts_dir = abspath(join(get_emperor_project_dir()[:-3],
'scripts/'))
else:
emperor_scripts_dir = abspath(opts.emperor_scripts_dir)
# make a sanity check
if (suppress_unit_tests and suppress_script_usage_tests and
suppress_javascript_unit_tests):
option_parser.error("All tests have been suppresed. Nothing to run.")
test_dir = abspath(dirname(__file__))
unittest_good_pattern = re.compile('OK\s*$')
application_not_found_pattern = re.compile('ApplicationNotFoundError')
python_name = 'python'
bad_tests = []
missing_application_tests = []
# Run through all of Emperor's unit tests, and keep track of any files which
# fail unit tests, note that these are the unit tests only
if not suppress_unit_tests:
unittest_names = []
if not unittest_glob:
for root, dirs, files in walk(test_dir):
for name in files:
if name.startswith('test_') and name.endswith('.py'):
unittest_names.append(join(root,name))
else:
for fp in glob(unittest_glob):
fn = split(fp)[1]
if fn.startswith('test_') and fn.endswith('.py'):
unittest_names.append(abspath(fp))
unittest_names.sort()
for unittest_name in unittest_names:
print "Testing %s:\n" % unittest_name
command = '%s %s -v' % (python_name, unittest_name)
stdout, stderr, return_value = qcli_system_call(command)
print stderr
if not unittest_good_pattern.search(stderr):
if application_not_found_pattern.search(stderr):
missing_application_tests.append(unittest_name)
else:
bad_tests.append(unittest_name)
script_usage_failures = 0
# choose to run some of the script usage tests or all the available ones
if not suppress_script_usage_tests and exists(emperor_test_data_dir) and\
exists(emperor_scripts_dir):
if script_usage_tests != None:
script_tests = script_usage_tests.split(',')
else:
script_tests = None
initial_working_directory = getcwd()
# Run the script usage testing functionality; note that depending on the
# module where this was imported, the name of the arguments will change
# that's the reason why I added the name of the arguments in here
script_usage_result_summary, script_usage_failures = \
run_script_usage_tests( emperor_test_data_dir, # test_data_dir
emperor_scripts_dir, # scripts_dir
temp_filepath, # working_dir
True, # verbose
script_tests, # tests
None, # failure_log_fp
False) # force_overwrite
# running script usage tests breaks the current working directory
chdir(initial_working_directory)
if not suppress_javascript_unit_tests:
runner = join(test_dir, 'javascript_tests', 'runner.js')
index = join(test_dir, 'javascript_tests', 'index.html')
o, e, r = qcli_system_call('phantomjs %s %s' % (runner, index))
if o:
print o
if e:
print e
# if all the tests passed
javascript_tests_passed = True if r == 0 else False
else:
javascript_tests_passed = True
print "==============\nResult summary\n=============="
if not suppress_unit_tests:
print "\nUnit test result summary\n------------------------\n"
if bad_tests:
print "\nFailed the following unit tests.\n%s" %'\n'.join(bad_tests)
if missing_application_tests:
print "\nFailed the following unit tests, in part or whole due "+\
"to missing external applications.\nDepending on the Emperor "+\
"features you plan to use, this may not be critical.\n%s"\
% '\n'.join(missing_application_tests)
if not(missing_application_tests or bad_tests):
print "\nAll unit tests passed.\n"
if not suppress_script_usage_tests:
if exists(emperor_test_data_dir) and exists(emperor_scripts_dir):
print "\nScript usage test result summary"+\
"\n--------------------------------\n"
print script_usage_result_summary
else:
print ("\nCould not run script usage tests.\nThe Emperor scripts "
"directory could not be automatically located, try supplying "
" it manually using the --emperor_scripts_dir option.")
if not suppress_javascript_unit_tests:
print ('\nJavaScript unit tests result summary\n'
'------------------------------------\n')
if javascript_tests_passed:
print 'All JavaScript unit tests passed.\n'
else:
print 'JavaScript unit tests failed, check the summary above.'
# In case there were no failures of any type, exit with a return code of 0
return_code = 1
if (len(bad_tests) == 0 and len(missing_application_tests) == 0 and
script_usage_failures == 0 and javascript_tests_passed):
return_code = 0
return return_code
def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
unittest_glob = opts.unittest_glob
temp_filepath = opts.temp_filepath
script_usage_tests = opts.script_usage_tests
suppress_unit_tests = opts.suppress_unit_tests
suppress_script_usage_tests = opts.suppress_script_usage_tests
suppress_javascript_unit_tests = opts.suppress_javascript_unit_tests
# since the test data is in the tests folder just add scripts_test_data
ili_test_data_dir = join(abspath(dirname(__file__)), 'scripts_test_data/')
# offer the option for the user to pass the scripts dir from the command
# line since there is no other way to get the scripts dir. If not provided
# the base structure of the repository will be assumed. Note that for both
# cases we are using absolute paths, to avoid unwanted failures.
if opts.ili_scripts_dir is None:
ili_scripts_dir = abspath(join(get_ili_project_dir(), 'scripts/'))
else:
ili_scripts_dir = abspath(opts.ili_scripts_dir)
# make a sanity check
if (suppress_unit_tests and suppress_script_usage_tests
and suppress_javascript_unit_tests):
option_parser.error("All tests have been suppresed. Nothing to run.")
test_dir = abspath(dirname(__file__))
unittest_good_pattern = re.compile('OK\s*$')
application_not_found_pattern = re.compile('ApplicationNotFoundError')
python_name = 'python'
bad_tests = []
missing_application_tests = []
# Run through all of ili's unit tests, and keep track of any files
# which fail unit tests, note that these are the unit tests only
if not suppress_unit_tests:
unittest_names = []
if not unittest_glob:
for root, dirs, files in walk(test_dir):
for name in files:
if name.startswith('test_') and name.endswith('.py'):
unittest_names.append(join(root, name))
else:
for fp in glob(unittest_glob):
fn = split(fp)[1]
if fn.startswith('test_') and fn.endswith('.py'):
unittest_names.append(abspath(fp))
unittest_names.sort()
for unittest_name in unittest_names:
print "Testing %s:\n" % unittest_name
command = '%s %s -v' % (python_name, unittest_name)
stdout, stderr, return_value = qcli_system_call(command)
print stderr
if not unittest_good_pattern.search(stderr):
if application_not_found_pattern.search(stderr):
missing_application_tests.append(unittest_name)
else:
bad_tests.append(unittest_name)
script_usage_failures = 0
# choose to run some of the script usage tests or all the available ones
if (not suppress_script_usage_tests and exists(ili_test_data_dir)
and exists(ili_scripts_dir)):
if script_usage_tests is not None:
script_tests = script_usage_tests.split(',')
else:
script_tests = None
initial_working_directory = getcwd()
# Run the script usage testing functionality; note that depending on
# the module where this was imported, the name of the arguments will
# change that's the reason why I added the name of the arguments in
# here
script_usage_result_summary, script_usage_failures = \
run_script_usage_tests(ili_test_data_dir, # test_data_dir
ili_scripts_dir, # scripts_dir
temp_filepath, # working_dir
True, # verbose
script_tests, # tests
None, # failure_log_fp
False) # force_overwrite
# running script usage tests breaks the current working directory
chdir(initial_working_directory)
if not suppress_javascript_unit_tests:
runner = join(test_dir, 'javascript_tests', 'runner.js')
index = join(test_dir, 'javascript_tests', 'index.html')
o, e, r = qcli_system_call('phantomjs %s %s' % (runner, index))
if o:
print o
if e:
print e
# if all the tests passed
javascript_tests_passed = True if r == 0 else False
else:
javascript_tests_passed = True
print "==============\nResult summary\n=============="
if not suppress_unit_tests:
print "\nUnit test result summary\n------------------------\n"
if bad_tests:
print("\nFailed the following unit tests.\n%s" %
'\n'.join(bad_tests))
if missing_application_tests:
print(
"\nFailed the following unit tests, in part or whole due "
"to missing external applications.\nDepending on the "
"ili features you plan to use, this may not be "
"critical.\n%s" % '\n'.join(missing_application_tests))
if not (missing_application_tests or bad_tests):
print "\nAll unit tests passed.\n"
if not suppress_script_usage_tests:
if exists(ili_test_data_dir) and exists(ili_scripts_dir):
print(
"\nScript usage test result summary"
"\n--------------------------------\n")
print script_usage_result_summary
else:
print(
"\nCould not run script usage tests.\nThe ili scripts "
"directory could not be automatically located, try "
"supplying it manually using the --ili_scripts_dir "
"option.")
if not suppress_javascript_unit_tests:
print(
'\nJavaScript unit tests result summary\n'
'------------------------------------\n')
if javascript_tests_passed:
print 'All JavaScript unit tests passed.\n'
else:
print 'JavaScript unit tests failed, check the summary above.'
# In case there were no failures of any type, exit with a return code of 0
return_code = 1
if (len(bad_tests) == 0 and len(missing_application_tests) == 0
and script_usage_failures == 0 and javascript_tests_passed):
return_code = 0
return return_code
