def test_filter_by_otu_hits(self):
"""filter_by_otu_hits: filters the table by otu hits per otu"""
exp=array([['#OTU ID', 'OTU2'],['Sample1',1],['Sample2',5],\
['Consensus Lineage','Archaea;']])
obs=filter_by_otu_hits(self.num_otu_hits,self.data)
self.assertEqual(obs,exp)
def test_filter_by_otu_hits(self):
"""filter_by_otu_hits: filters the table by otu hits per otu"""
exp=array([['#OTU ID', 'OTU2'],['Sample1',1],['Sample2',5],\
['Consensus Lineage','Archaea;']])
obs = filter_by_otu_hits(self.num_otu_hits, self.data)
self.assertEqual(obs, exp)
def test_filter_by_otu_hits(self):
"""filter_by_otu_hits: filters the table by otu hits per otu"""
exp = array([['#OTU ID', 'OTU2'], ['Sample1', 1], ['Sample2', 5],
['Consensus Lineage', 'Archaea;']])
obs = filter_by_otu_hits(self.num_otu_hits, self.otu_table)
# see note in test_get_log_transform about this assert
self.assertEqual(obs._data.items(), self.filt_otu_table._data.items())
