def test_filter_by_otu_hits(self): """filter_by_otu_hits: filters the table by otu hits per otu""" exp=array([['#OTU ID', 'OTU2'],['Sample1',1],['Sample2',5],\ ['Consensus Lineage','Archaea;']]) obs=filter_by_otu_hits(self.num_otu_hits,self.data) self.assertEqual(obs,exp)
def test_filter_by_otu_hits(self): """filter_by_otu_hits: filters the table by otu hits per otu""" exp=array([['#OTU ID', 'OTU2'],['Sample1',1],['Sample2',5],\ ['Consensus Lineage','Archaea;']]) obs = filter_by_otu_hits(self.num_otu_hits, self.data) self.assertEqual(obs, exp)
def test_filter_by_otu_hits(self): """filter_by_otu_hits: filters the table by otu hits per otu""" exp = array([['#OTU ID', 'OTU2'], ['Sample1', 1], ['Sample2', 5], ['Consensus Lineage', 'Archaea;']]) obs = filter_by_otu_hits(self.num_otu_hits, self.otu_table) # see note in test_get_log_transform about this assert self.assertEqual(obs._data.items(), self.filt_otu_table._data.items())