def test_multisurf_Multiplexer(): """ Test MultiSURF on 6-bit Multiplexer """ #New parameters options['algorithm'] = 'multisurf' Scores = MS.runMultiSURF(header, x, y, attr, var, distArray, options) print("MultiSURF + 6-bit Multiplexer ") print(str(Scores)) #Check that score list is not empty assert Scores != None #Check that a score for all features is output assert len(Scores) == 6 #6-bit Multiplexer problem #Check that all scores fall between -1 and 1 assert max(Scores) <= 1 and min(Scores) >= -1 #Check that the address bits (indexed as features 0 and 1) have the top scores as expected. indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 0 or indexTopScore == 1 Scores.pop(indexTopScore) indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 0
def test_multisurfstar_GWAS_Sim(): """ Test MultiSURF* on GWAS_Sim """ #New parameters options['algorithm'] = 'multisurfstar' Scores = MS.runMultiSURF(header, x, y, attr, var, distArray, options) print("MultiSURF* + GWAS_Sim ") print(str(Scores)) #Check that score list is not empty assert Scores != None #Check that a score for all features is output assert len(Scores) == 20 #GWAS simulated dataset #Check that all scores fall between -1 and 1 assert max(Scores) <= 1 and min(Scores) >= -1 #Check that the address bits (indexed as features 0 and 1) have the top scores as expected. indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 18 or indexTopScore == 19 Scores.pop(indexTopScore) indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 18
def test_multisurf_GWAS_Sim(): """ Test MultiSURF on GWAS_Sim Multiclass""" #New parameters options['algorithm'] = 'multisurf' Scores = MS.runMultiSURF(header, x, y, attr, var, distArray, options) print("MultiSURF + GWAS_Sim MC") print(str(Scores)) #Check that score list is not empty assert Scores != None #Check that a score for all features is output assert len(Scores) == 20 #GWAS simulated dataset #Check that all scores fall between -1 and 1 assert max(Scores) <= 1 and min(Scores) >= -1 #Check that the address bits (indexed as features 0 and 1) have the top scores as expected. indexTopScore = Scores.index(max(Scores)) assert indexTopScore ==18 or indexTopScore == 19 Scores.pop(indexTopScore) indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 18
def test_multisurf_Multiplexer(): """ Test MultiSURF on 6-bit Multiplexer """ #New parameters options['algorithm'] = 'multisurf' Scores = MS.runMultiSURF(header, x, y, attr, var, distArray, options) print("MultiSURF + 6-bit Multiplexer ") print(str(Scores)) #Check that score list is not empty assert Scores != None #Check that a score for all features is output assert len(Scores) == 6 #6-bit Multiplexer problem #Check that all scores fall between -1 and 1 assert max(Scores) <= 1 and min(Scores) >= -1 #Check that the address bits (indexed as features 0 and 1) have the top scores as expected. indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 0 or indexTopScore == 1 Scores.pop(indexTopScore) indexTopScore = Scores.index(max(Scores)) assert indexTopScore == 0