Ejemplo n.º 1
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def sortCsv(inpath, outpath, tickFunction=tick, numTicks=100):
    csvKey.delimiter, headers, csvKey.chromColumn, csvKey.posColumn, idColumn = sniffCsv(
        inpath)
    batch_sort(inpath,
               outpath,
               key=csvKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Ejemplo n.º 2
0
def sortBed(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath,
               outpath,
               key=bedKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Ejemplo n.º 3
0
def sortVcf(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath,
               outpath,
               key=vcfKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Ejemplo n.º 4
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def sortBed(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath, outpath, key=bedKey, tickFunction=tickFunction, numTicks=numTicks)
Ejemplo n.º 5
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def sortCsv(inpath, outpath, tickFunction=tick, numTicks=100):
    csvKey.delimiter, headers, csvKey.chromColumn, csvKey.posColumn, idColumn = sniffCsv(inpath)
    batch_sort(inpath, outpath, key=csvKey, tickFunction=tickFunction, numTicks=numTicks)
Ejemplo n.º 6
0
def sortVcf(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath, outpath, key=vcfKey, tickFunction=tickFunction, numTicks=numTicks)