Exemple #1
0
def sortCsv(inpath, outpath, tickFunction=tick, numTicks=100):
    csvKey.delimiter, headers, csvKey.chromColumn, csvKey.posColumn, idColumn = sniffCsv(
        inpath)
    batch_sort(inpath,
               outpath,
               key=csvKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Exemple #2
0
def sortBed(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath,
               outpath,
               key=bedKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Exemple #3
0
def sortVcf(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath,
               outpath,
               key=vcfKey,
               tickFunction=tickFunction,
               numTicks=numTicks)
Exemple #4
0
def sortBed(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath, outpath, key=bedKey, tickFunction=tickFunction, numTicks=numTicks)
Exemple #5
0
def sortCsv(inpath, outpath, tickFunction=tick, numTicks=100):
    csvKey.delimiter, headers, csvKey.chromColumn, csvKey.posColumn, idColumn = sniffCsv(inpath)
    batch_sort(inpath, outpath, key=csvKey, tickFunction=tickFunction, numTicks=numTicks)
Exemple #6
0
def sortVcf(inpath, outpath, tickFunction=tick, numTicks=100):
    batch_sort(inpath, outpath, key=vcfKey, tickFunction=tickFunction, numTicks=numTicks)